Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19j03
(944 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 157 1e-38
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 157 1e-38
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 157 1e-38
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 157 1e-38
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 146 2e-35
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 139 2e-33
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 138 7e-33
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 138 7e-33
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 41 0.001
AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans Phosphodieste... 29 3.7
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 29 3.7
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 28 8.5
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 157 bits (380), Expect = 1e-38
Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
Frame = +3
Query: 15 KAICIISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEH 191
+A+ ++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 192 FNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTD 371
FNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+VVH
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 372 KDDLGL---TEHPLSKTTGNSDGRLGCGIIAI 458
+DDLG + SK TGN+ R CG+IA+
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 157 bits (380), Expect = 1e-38
Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
Frame = +3
Query: 15 KAICIISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEH 191
+A+ ++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 192 FNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTD 371
FNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+VVH
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 372 KDDLGL---TEHPLSKTTGNSDGRLGCGIIAI 458
+DDLG + SK TGN+ R CG+IA+
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 157 bits (380), Expect = 1e-38
Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
Frame = +3
Query: 15 KAICIISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEH 191
+A+ ++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 192 FNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTD 371
FNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+VVH
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 372 KDDLGL---TEHPLSKTTGNSDGRLGCGIIAI 458
+DDLG + SK TGN+ R CG+IA+
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 157 bits (380), Expect = 1e-38
Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
Frame = +3
Query: 15 KAICIISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEH 191
+A+ ++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG H
Sbjct: 26 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 85
Query: 192 FNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTD 371
FNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+VVH
Sbjct: 86 FNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 144
Query: 372 KDDLGL---TEHPLSKTTGNSDGRLGCGIIAI 458
+DDLG + SK TGN+ R CG+IA+
Sbjct: 145 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 146 bits (354), Expect = 2e-35
Identities = 66/152 (43%), Positives = 100/152 (65%), Gaps = 4/152 (2%)
Frame = +3
Query: 15 KAICIISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEH 191
+A+ ++ G V G ++ Q++ + G + L GLHGFH+H+YGD+++GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 192 FNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTD 371
FNP +HG D+ +RHVGDLGN+++ G + + +I D V+SL+G + +IGRS+VVH D
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEA-GADGVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142
Query: 372 KDDLGL---TEHPLSKTTGNSDGRLGCGIIAI 458
+DDLG + S TGN+ R CG+IA+
Sbjct: 143 RDDLGQGIDDKAEESLKTGNAGARAACGVIAL 174
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 139 bits (337), Expect = 2e-33
Identities = 71/143 (49%), Positives = 90/143 (62%)
Frame = +3
Query: 30 ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 209
I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 36 IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 210 DHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL 389
HGAPD RH+GDLGNI+S T I++ D++ SL G ++IIGRS+V+H DDLG
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGR 152
Query: 390 TEHPLSKTTGNSDGRLGCGIIAI 458
SKTTGN+ RL CG I I
Sbjct: 153 GTSDQSKTTGNAGSRLACGTIGI 175
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 138 bits (333), Expect = 7e-33
Identities = 70/141 (49%), Positives = 89/141 (63%)
Frame = +3
Query: 30 ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 209
I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 36 IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 210 DHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL 389
HGAPD RH+GDLGNI+S T I++ D++ SL G ++IIGRS+V+H DDLG
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGR 152
Query: 390 TEHPLSKTTGNSDGRLGCGII 452
SKTTGN+ RL CG I
Sbjct: 153 GTSDQSKTTGNAGSRLACGTI 173
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 138 bits (333), Expect = 7e-33
Identities = 70/141 (49%), Positives = 89/141 (63%)
Frame = +3
Query: 30 ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 209
I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 36 IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 210 DHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL 389
HGAPD RH+GDLGNI+S T I++ D++ SL G ++IIGRS+V+H DDLG
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGR 152
Query: 390 TEHPLSKTTGNSDGRLGCGII 452
SKTTGN+ RL CG I
Sbjct: 153 GTSDQSKTTGNAGSRLACGTI 173
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 18 AICIISGDVH-GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHF 194
AI I H G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F
Sbjct: 886 AILITREGAHIGRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPF 944
Query: 195 N 197
+
Sbjct: 945 S 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 18 AICIISGDVH-GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHF 194
AI I H G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F
Sbjct: 677 AILITREGAHIGRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPF 735
Query: 195 N 197
+
Sbjct: 736 S 736
>AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans
Phosphodiesterase protein 6, isoformb protein.
Length = 697
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 383 QIVFVRVHDQTSSYNIMRAI*RHNVVHHVYFGQRIVANRLYVAQVAN 243
+++ V + ++ S RA+ + N++HHV + R V YV ++AN
Sbjct: 175 EVLIVSIAEKHISEKRRRALAQSNIIHHVTWNTRDVVLFDYVGRLAN 221
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 383 QIVFVRVHDQTSSYNIMRAI*RHNVVHHVYFGQRIVANRLYVAQVAN 243
+++ V + ++ S RA+ + N++HHV + R V YV ++AN
Sbjct: 175 EVLIVSIAEKHISEKRRRALAQSNIIHHVTWNTRDVVLFDYVGRLAN 221
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 28.3 bits (60), Expect = 8.5
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Frame = +3
Query: 108 LNLPRGLHGFHVHEYGD---TSNGCTSAGEHFNPTNEDHGAPDAEIRHV-GDLGNI-KSV 272
L+ +H H GD + +GC + + N E D E + + N+ SV
Sbjct: 304 LHTALNIHTHHTGTVGDDRESGHGCDQSLDGMNEKKETDFMDDIEGTFLLFAISNLLTSV 363
Query: 273 GYNS------------LTEINMMDNVMSLYGPHNIIGR 350
G+NS L++ N+ N++S+YG N IGR
Sbjct: 364 GFNSPLYFLPLHVTNILSDNNVSGNILSVYGTANTIGR 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,255,710
Number of Sequences: 27780
Number of extensions: 405375
Number of successful extensions: 944
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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