Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i23
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.13 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   1.6  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   4.8  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.3  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 326 STTVKRTDSSHRLKSQVV-DKRPR--RSLDSPRLDGYVLASSPIPHTDWNEELKLYAQSH 496
           STT  +TDSS+     +V   +P    SLD  +L   + A  PI   ++  + KLYA  H
Sbjct: 309 STTTSQTDSSYNDVHDIVGSSQPDYLESLDYSQLFSILYALYPINFLEFLRDPKLYASKH 368

Query: 497 GY 502
            +
Sbjct: 369 NF 370


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 164 DLKNSVDWNGSTRKLLRVLNKRAYRQVLQCNGRYYW 271
           D K++V   GS     R+ N+R++R   Q   +Y W
Sbjct: 730 DGKHNVVLGGSFATATRISNRRSFRNFYQAGYKYAW 765


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 80  NKMVFDVYYNGYYVEKKFSKEFLIHIAPDLKNSVDW 187
           N +V  VY NG     +F      HIAP+ +   DW
Sbjct: 301 NSVVSSVYMNGSNSVPRFILYSTTHIAPETEIIGDW 336


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 167 LKNSVDWNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNR 310
           ++N +  NG+  K  R+L K +Y+  L+    ++  +GT  ++H Y R
Sbjct: 559 VENIMQNNGTNLKNWRILLKASYKFWLRTYRVFFLNNGTLPLNHPYVR 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,918
Number of Sequences: 5004
Number of extensions: 41728
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)