Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i23
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61...    29   3.7  
05_05_0272 - 23738514-23738817,23739382-23740748                       29   3.7  
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959     29   3.7  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    28   4.9  
02_04_0134 - 20109610-20109984                                         28   4.9  
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730...    27   8.6  
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735...    27   8.6  
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    27   8.6  

>12_01_0072 +
           609254-609722,610355-610421,610652-610745,610984-611127
          Length = 257

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 180 STGTAARANCCAF*TSVPTDRCCSATADTIGPMAQSLFLMCTT 308
           S  TAA + C A  +  P  +  SAT +T  P +    L C++
Sbjct: 57  SDTTAAASTCSASPSHTPVSKPSSATGETAAPQSNLCALRCSS 99


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 371 QVVDKRPRRSLDSPRLDGYVLASSPIPHTDWN-EELKLY 484
           +++ + P +S+DS  LDGY   +  +    W+ EE K Y
Sbjct: 432 EIIFENPEKSMDSVHLDGYAFFAVGMGPGKWSAEERKTY 470


>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
          Length = 395

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 42  SRRHRFYK-NICGVIKWCSTCTTTAIMWK 125
           +RRH F + ++CGV+ +CS     A+ WK
Sbjct: 334 TRRHEFRRCSVCGVVNYCSR-ACQALHWK 361


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +2

Query: 326 STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLA-----SSPIPHT 457
           S+T+ RT SS    +    KRPRR   +P  D  VLA       P PHT
Sbjct: 38  SSTLGRTRSSSSASATPNSKRPRRPPCTPESDPPVLALRAHTPDPDPHT 86


>02_04_0134 - 20109610-20109984
          Length = 124

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 196 HAQTAARFKQACLQTGVAVQRQILLARWHKVC 291
           +A + A  +QAC + G A Q + L  RW K C
Sbjct: 14  NAASRAERRQACSEQGAAKQARRLERRWAKQC 45


>12_02_1099 -
           26072301-26072468,26072642-26072751,26072966-26073014,
           26073081-26073495,26073604-26074019
          Length = 385

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +2

Query: 239 QVLQCNGRYYWPDGTKFVSHVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSPRL 418
           Q L   G+YY  D        Y    R     V++  +  R KS++ D+   R       
Sbjct: 288 QTLPKEGKYYVVDAGYLNCPGYLSPYRCTRYHVEQWKNGPRHKSKIRDREFARC--DADA 345

Query: 419 DGYVLASSPIPHTDWNEELKLYAQSH 496
           D + + +SP  H+DW+E+  L   S+
Sbjct: 346 DYFPMPTSP--HSDWSEDEPLVEDSN 369


>09_06_0070 -
           20670387-20670473,20672418-20672645,20673388-20673508,
           20673604-20673702,20673802-20673833
          Length = 188

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 322 AQHNSQTDRQLASIKKPGSRQTAAPFFRFSSFGRICFGIVA 444
           A+H +  DR L  ++      TA+      S GR CF  VA
Sbjct: 99  ARHEADIDRGLLQLRASAKDATASHLQAAVSLGRACFAEVA 139


>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +2

Query: 233 YRQVLQCNG---RYYWPDGTKFV 292
           +R+ L C G   R +WPD T+FV
Sbjct: 498 HREALHCKGEEHRLFWPDQTEFV 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,137
Number of Sequences: 37544
Number of extensions: 267162
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)