Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i23
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 0.47
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 31 0.47
L23645-3|AAK26139.1| 211|Caenorhabditis elegans Zinc finger pro... 30 1.4
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 4.4
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 4.4
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 4.4
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 4.4
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 104 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 253
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 104 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 253
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 104 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 253
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>L23645-3|AAK26139.1| 211|Caenorhabditis elegans Zinc finger
protein protein 1,isoform b protein.
Length = 211
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 296 HVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSP 412
H +NR++ + KR D+ HR ++ + R + SL +P
Sbjct: 37 HNHNRTLLKRTVGGKRKDTGHRHRTSTIPPRDKSSLHAP 75
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +2
Query: 155 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 328
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 329 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 466
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +2
Query: 155 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 328
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 329 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 466
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +2
Query: 155 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 328
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 329 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 466
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +2
Query: 155 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 328
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 329 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 466
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,821
Number of Sequences: 27780
Number of extensions: 245378
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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