Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i22
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)                     42   3e-04
SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)                   28   4.2  
SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)                   28   5.6  
SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_15683| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   7.4  
SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)          27   9.8  
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)
          Length = 476

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +2

Query: 230 RMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 355
           R++ GNQR+LARAKNQKKQ   +  ++ + K G +L +RK R
Sbjct: 214 RVSGGNQRELARAKNQKKQTGKKASEHDANK-GQNLTDRKQR 254


>SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)
          Length = 444

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 263 RAKNQKKQVEMQKKKNASEKTGLSLQERK 349
           +AKN+KKQ E++KKK    +  +  + RK
Sbjct: 357 QAKNEKKQREIEKKKEEEARQQMEREMRK 385


>SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)
          Length = 653

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 236 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 358
           T  N ++  R KN+K+ V+ Q+ KNA   +  ++   K  D
Sbjct: 169 TEPNSKNQTRGKNKKESVQEQESKNAVTVSNATVTGTKKLD 209


>SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 230 RMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 358
           R     QR+LAR KN  ++ E Q    A  K  L L+++K+++
Sbjct: 6   RQLNRTQRELARDKNALERQEKQLAATALAKQLLQLRKQKNKN 48


>SB_15683| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 753

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 221 NFTKEKFTFVATYNYFKNTVKAGRYASPVET*DNAPPSISPIGV 90
           + TK   TF+ +      T  +G    P++T  N PPS+S   V
Sbjct: 51  HLTKYLHTFIRSVQAVSGTAVSGVDFEPLQTTINIPPSVSTYNV 94


>SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)
          Length = 264

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 227 IRMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLS 334
           + M RG+Q+  ++ KN +K+ +M+K +   +K   S
Sbjct: 187 VTMARGHQKIQSQQKNAEKKKKMEKAQGHDQKKAAS 222


>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 254  DLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 355
            D ++ K+++ QVE   +KN+ ++ G   +E  H+
Sbjct: 996  DASKIKSKEVQVESGNRKNSDQQNGKQTKENIHK 1029


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,428
Number of Sequences: 59808
Number of extensions: 233941
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)