Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i21
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 7e-04
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 35 0.003
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 35 0.004
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 34 0.007
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.009
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.081
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 30 0.081
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.11
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.11
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 29 0.14
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.25
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 0.75
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 0.75
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 26 1.3
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 26 1.7
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 1.7
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 2.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 2.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 3.0
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 3.0
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 3.0
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 4.0
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 25 4.0
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 24 5.3
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 24 5.3
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 24 5.3
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 24 7.0
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 24 7.0
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 24 7.0
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 24 7.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 9.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 23 9.2
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 37.1 bits (82), Expect = 7e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 188 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 271
+++CA+C P +L C HVFC C+
Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCL 384
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 35.1 bits (77), Expect = 0.003
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 197 CAVCLQKCQHPTKLSCGHVFCFLCVKV 277
C +C +K ++P LS G VFC+ C++V
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQV 283
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 34.7 bits (76), Expect = 0.004
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 188 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 271
+Y C +CL ++ + CGH+FC C+
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCI 230
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.9 bits (74), Expect = 0.007
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 197 CAVCLQKCQHPTKLSCGHVFCFLCV 271
C++C++ P CGH+FC+ C+
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCI 280
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.5 bits (73), Expect = 0.009
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 194 DCAVCLQKCQHPTKLSCGHVFCFLCV 271
+C +C + Q P CGH +C+ C+
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECL 109
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.081
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 197 CAVCLQKCQHPTKLS-CGHVFCFLCV 271
C CL++ ++S CGHV+CF C+
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCL 239
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.081
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 188 EYDCAVCLQKCQHPT-KLSCGHVFCFLCVKV 277
+++C+VCL C P + CGH C C+ +
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECMSM 633
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.11
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 197 CAVCLQKCQHPTKLSCGHVFCFLCVK 274
C +C + + P SC H FC C++
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIR 54
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.9 bits (64), Expect = 0.11
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 188 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 271
E +C +C P CGH FC C+
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCL 193
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 29.5 bits (63), Expect = 0.14
Identities = 15/66 (22%), Positives = 25/66 (37%)
Frame = +2
Query: 74 LENYEKLHTYLSNLEMGR*V*DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHV 253
L NY + ++ + D + K + + C +C + Q + C H
Sbjct: 670 LNNYANIFQLITRMRQMADHPDLVLASKRKTVDIENQENIVCKICDEVAQDAIESRCHHT 729
Query: 254 FCFLCV 271
FC LCV
Sbjct: 730 FCRLCV 735
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.25
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 182 NMEYDCAVCLQKCQHPTKLSCGHVFCFLC 268
++ + C +C + + P +CGH FC C
Sbjct: 249 DIPFVCLICKKDYRSPIATTCGHHFCEQC 277
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 0.75
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 176 SHNMEYDCAVCLQKCQHPTKLS-CGH-VFCFLCV 271
S + DC +CLQK +LS CGH F + C+
Sbjct: 14 SRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCI 47
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 0.75
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 305 YLKKITKYFKPSHKENRKHDR 243
+ K +KY+ PSHK++ K R
Sbjct: 627 HAKSFSKYYSPSHKDSNKTSR 647
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 1.3
Identities = 6/23 (26%), Positives = 17/23 (73%)
Frame = -2
Query: 251 HDRRIVLLDVDIFASKQHNHIPY 183
H+ +++ D+D+F+ +H+ +P+
Sbjct: 110 HEEMVIVRDIDVFSLCEHHLVPF 132
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 333 FFFYRAIFRLFKKNN 289
F FY I RLF KNN
Sbjct: 319 FVFYEGIIRLFNKNN 333
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 1.7
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Frame = +2
Query: 197 CAVCLQKCQH------PTKLSCGHVFCFLCV 271
C +C+Q+ P CGH +C+ C+
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACI 222
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 2.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 197 CAVC-LQKCQHPTKLSCGHVFCFLCVK 274
C+VC ++ + CGH FC+ C++
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQ 653
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 2.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Frame = +2
Query: 197 CAVCLQKCQHPTKLSCGHVFCFLCVK 274
C +C + +CGH++C C++
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLE 1117
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +2
Query: 197 CAVCLQK---CQHPTKLSCGHVFCFLCV 271
C+ ++K C H T C + FC++C+
Sbjct: 294 CSTTIEKNGGCNHMTCKKCKYEFCWVCL 321
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 3.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 242 CGHVFCFLCVKV 277
CGHV+C C KV
Sbjct: 212 CGHVYCGSCAKV 223
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 3.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 305 YLKKITKYFKPSHKENRKHDRRIVLLDVDIFASKQHNHIPYYVRKLIQ 162
Y K IT KEN + VLLD FA+ + HI + + K+++
Sbjct: 58 YFKSITSDLYEWQKENLNKEDSFVLLDGPPFANGR-LHIGHALNKILK 104
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 299 KKITKYFKPSHKENRKHDRRIVLL 228
+K+ ++F HK+ KH R+V L
Sbjct: 111 RKLFRWFNDLHKQAEKHGGRVVRL 134
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 24.6 bits (51), Expect = 4.0
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2
Query: 56 GWIWTNIIVFY 24
GW WT+++ FY
Sbjct: 68 GWFWTSLVYFY 78
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 194 DCAVCLQK-CQHPTKLSCGHVFCFLCV 271
+C +C + Q+P L+C H C C+
Sbjct: 876 ECPICCNEPIQNPLLLNCKHACCGDCL 902
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 41 LSISSQS*FETLENYEKLH 97
L+++SQ+ TLE Y+K+H
Sbjct: 287 LNVNSQNLTSTLEKYKKMH 305
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 24.2 bits (50), Expect = 5.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 242 CGHVFCFLCVK 274
CGH+FC C K
Sbjct: 167 CGHLFCSTCAK 177
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 134 ILIYPFPNYLNMCVVFHNFLTFQINFGWIWTNIIVF 27
I+++P+P Y + F T + G IW VF
Sbjct: 565 IILWPWPMYGTGYIFSKRFFTGWVVVGLIWIFFTVF 600
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 23.8 bits (49), Expect = 7.0
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +2
Query: 155 KHAVLIFSHNMEYDCAVCLQK-----CQHPTKLSCGHVFCFLCVK 274
K+A L+ ++ C VC + C T+ CGHV C C++
Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTR--CGHVSCQSCLR 202
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 7.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 227 PTKLSCGHVFCFLCVK 274
P +L CGH+ F C++
Sbjct: 323 PKRLPCGHILHFHCLR 338
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 332 FFFTGLYFVYLKKITKYFKPSHKENRKHDRRIVLLDVDIF 213
F+F+GLY + ++Y + +K R + R+V+ V F
Sbjct: 82 FYFSGLYRTTIVYPSRYVQQVNKAMRFFNIRLVITPVPWF 121
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 203 VCLQKCQHPTKLSCGHVFC 259
+C + C KLSCG+ FC
Sbjct: 584 ICFRPCNK--KLSCGNHFC 600
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = +2
Query: 185 MEYDCAVCLQKC-----QHPTKLSCGHVFCFLCVK 274
M+ C +C + TK+ CGH+F C++
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQ 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,661
Number of Sequences: 5004
Number of extensions: 29254
Number of successful extensions: 92
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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