Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i21
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   3.9  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   6.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   6.8  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    20   6.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   9.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 113 NYLNMCVV-FHNFLTFQINFGWIW 45
           N+   C+  F N + + +  GWIW
Sbjct: 144 NFKAYCLFSFLNTIVYCVPAGWIW 167


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 45  PYPAKVNLKR*KIMKNY 95
           PY  ++ L+R KIMK Y
Sbjct: 88  PYEWQLILRRYKIMKYY 104


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 315 IFRLFKKNNKILQTFTQ 265
           +FR F +  ++LQ F Q
Sbjct: 150 LFRHFSQRQEVLQAFKQ 166


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 315 IFRLFKKNNKILQTFTQ 265
           +FR F +  ++LQ F Q
Sbjct: 118 LFRHFSQRQEVLQAFKQ 134


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 180 CEKINTACLSTHKLSHTYLPISKLLKYVC 94
           CEK + +C++   L+      S + +Y C
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQYRC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,761
Number of Sequences: 438
Number of extensions: 2082
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)