Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i20
         (375 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   1.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   4.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.4  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   5.4  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   5.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = -2

Query: 302 NFTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASEL---TCQDGFCNATNALLNAQAP 132
           N  +  N   DCS        DQ    + V ++A  ++       G  N TN+L     P
Sbjct: 86  NSNYSSNSKPDCSKGN----ADQNGYASVVAAAAVKDVWQSATSGGGANLTNSLTGPVRP 141

Query: 131 DLIECDPALGLLHIFSAGGD 72
                D  +G   +   GGD
Sbjct: 142 AACTPDSRVGYGSVGLVGGD 161


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 65  VSQACVSTYRDLVDDTGTPRP 3
           VS  CVS   +   +TG+ RP
Sbjct: 82  VSHGCVSKILNRYQETGSIRP 102


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 347 QDAHMRINELEAPPL-NFTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGF 171
           +D H   + +    L N T Q N  +   L   P ++ +   D  +  + +S   C++ +
Sbjct: 444 KDPHYGFHNVTNTTLQNLTPQLNY-ISMKLQSFPLLSQRHQIDAKMFCNESSVSNCENEY 502

Query: 170 CNATNAL 150
           C  T+ +
Sbjct: 503 CECTHVV 509


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 143 AQAPDLIECDPALGL 99
           A  PD   CDP++GL
Sbjct: 42  AVQPDPGSCDPSVGL 56


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 263 LNRLPCVTDQQCRDNCVISSAASELTCQDG 174
           L  L C   ++    C+I  A + LTC +G
Sbjct: 25  LGLLSCSFPKKKLVYCIIFGAIATLTCIEG 54


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 263 LNRLPCVTDQQCRDNCVISSAASELTCQDG 174
           L  L C   ++    C+I  A + LTC +G
Sbjct: 21  LGLLSCSFPKKKLVYCIIFGAIATLTCIEG 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,413
Number of Sequences: 336
Number of extensions: 1859
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)