Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i20
(375 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37) 27 5.0
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 6.5
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_39510| Best HMM Match : VWA (HMM E-Value=0) 27 6.5
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027) 27 6.5
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012) 27 6.5
SB_1891| Best HMM Match : EGF (HMM E-Value=6.5e-15) 27 6.5
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 26 8.7
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_14224| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14) 26 8.7
>SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 145 FSKALVALQKPSWQVNSLAALEIT-QLSLHC*SVTHGNRFNEQSTPRLC*NVKFNGGA 315
F+K ++ +N L AL I S S G R N QSTP++ K +GG+
Sbjct: 6 FTKPTTKVEPKHLYMNKLIALTIILSTSFFTFSQVLGGRENSQSTPKVAEATKLSGGS 63
>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 107 VRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQ--RWKSR 217
+R R + P+P + WW + R R + RWKSR
Sbjct: 805 LRQRFVRLPDPGNPYRSWWTVASDDVRRQRRRKPRWKSR 843
>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
Length = 517
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -2
Query: 248 CVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIECDPALGLLH 93
CV QC N ++ E TC CN + D+ EC AL H
Sbjct: 303 CVEGNQCHSNATCNNTIGEYTCT---CNVGFTGDGYECNDVDECAHALHNCH 351
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -2
Query: 272 DCSLNRLPCVTDQQCRDNCVISSAASELTCQDGF 171
DC++N PCV + C C + +C G+
Sbjct: 2122 DCTVN--PCVLNGGCTHTCTVLDGKPVCSCPQGY 2153
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 275 VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNATNAL--LNAQAPDLIECDPALG 102
++ + +PC C + + A+ L F N +A+ +N+Q L+E D G
Sbjct: 733 LEVQVRLVPCFASSSCANAVAVKIGATVLNIHSRFANTEDAVVSVNSQEIALLEMDLGHG 792
Query: 101 LLH 93
+
Sbjct: 793 FTY 795
>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
Length = 705
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 281 RGVDCSLNRLPCVTDQQCRD-NCVISSAASELTCQDGF 171
+G DCSL+ C + ++ NC+ S + C+DGF
Sbjct: 32 QGKDCSLDVDKCKSSPCNKNQNCINSFGSFTCVCKDGF 69
>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
Length = 442
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = -2
Query: 254 LPCVTDQQCRDNCVISSAASELTCQDGFCNAT 159
L C Q+C C+ S + C CN T
Sbjct: 74 LQCAVKQECNQTCIAGRCVSAV-CSSRMCNQT 104
>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
Length = 489
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = -2
Query: 254 LPCVTDQQCRDNCVISSAASELTCQDGFCNAT 159
L C Q+C C+ S + C CN T
Sbjct: 74 LQCAVKQECNQTCIAGRCVSAV-CSSRMCNQT 104
>SB_1891| Best HMM Match : EGF (HMM E-Value=6.5e-15)
Length = 106
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 281 RGVDCSLNRLPCVTDQQCRD-NCVISSAASELTCQDGF 171
+G DCSL+ C + ++ NC+ S + C+DGF
Sbjct: 61 QGKDCSLDVDECKSSPCNKNQNCINSFGSFTCVCKDGF 98
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 251 PCVTDQQCRDNCVISSAASELTCQDGFC 168
PC D CRD A+ ++ C+DG C
Sbjct: 1162 PC-RDGSCRDAPFRDGASHDVACRDGSC 1188
>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 8 SAFPYRPPSLCTCSRMLETRQNLRLRRKCEASP 106
+A PYR LCTCS + LR+R EA P
Sbjct: 144 AAVPYRLMRLCTCS---DRSIRLRVRFVLEADP 173
>SB_14224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 63 HDKISACGENVKQAQCGIAFYQVRSLCV*QSVGGVTKTILAGQLACSAGNH 215
HD+++A +++ CGI + RS + + L+ SAG+H
Sbjct: 53 HDRLAATNHQIERISCGIYTHLSRSAAATNHQVEIISCGIYTHLSRSAGSH 103
>SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14)
Length = 842
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 86 RKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWK 211
R+C +S + R SSPEP+ K RY + R W+
Sbjct: 23 RECPSSAEQKRKASSPEPLPGKKSRTRYSPLSPEALRSGNWR 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,080
Number of Sequences: 59808
Number of extensions: 255316
Number of successful extensions: 691
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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