Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i20
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    31   0.27 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   0.47 
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   0.47 
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    30   0.62 
U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    27   5.8  
AF039041-4|ABS19460.1|  112|Caenorhabditis elegans Hypothetical ...    26   7.6  

>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 124 IKSGACAFSKALVALQKPSWQVNSLAALEITQ 219
           +K  A    KAL +L+K SWQV+SL  L   Q
Sbjct: 192 VKGQAHRLEKALASLEKVSWQVSSLLGLPAIQ 223


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 299 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 168
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 299 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 168
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -2

Query: 302 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALLNAQAPDL 126
           ++  +H +G D       C    +C  D C+         C D  CN++N L+   A  L
Sbjct: 60  SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGIL 119

Query: 125 I 123
           I
Sbjct: 120 I 120


>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
           protein F08D12.7 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 36  SVRAHACLRHDKISACGENVKQAQCG 113
           S +   C RH K+  C   V +A CG
Sbjct: 291 SKKEETCERHTKLKECTRTVMEASCG 316


>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 305 LNFTFQHNRGVDCSLNRLPCVTDQQCRDNC 216
           +N+ +    G  C  N +PC+    C  NC
Sbjct: 401 VNYNYDLRFGAFCDTNTMPCLRFDNCIRNC 430


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -2

Query: 242  TDQQCRDNCVISSAASELTCQDGFCN-ATNAL--LNAQAPDLIECDPALGLLHIFSAGGD 72
            T    +   +I +   E   ++G C   TN +  L  QA  L+  D A   +HI  +  D
Sbjct: 955  THSDAKTIVMIDTTEDESLIEEGLCREVTNRVQRLRKQAK-LVSTDTAH--VHIVVSPAD 1011

Query: 71   FVVSQACVSTYRDLVDDTGTP 9
              +++   +   D+V  TGTP
Sbjct: 1012 SQLAKVVAAKLNDIVSATGTP 1032


>Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical
           protein F27E5.4 protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 275 VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC-NATNALLN 144
           V CSL +L C  D QC     +  +  E     G C +    LLN
Sbjct: 99  VHCSLGKLACEGDLQCNSKFGVFMSECEADAARGACTDKCKTLLN 143


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 242 TDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIECD 114
           T   CR  C  +   S  +C  G CN+ N+ L    P    C+
Sbjct: 189 TTMTCRQTCQNTCLGSCNSCSGGGCNSNNSNLVVVTPCERSCN 231


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 50  RMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKN-HPGRSTRLQRWKSRSCL 226
           R   +R   R RR    S  R R      PVR ++R    ++  P R  + +  +SRS L
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSR-----SPVRESRRRSESRSPSPKRDLKREASRSRSPL 158

Query: 227 YTADPSRTVTGS 262
              D SRT +GS
Sbjct: 159 PAKDRSRTRSGS 170


>AF039041-4|ABS19460.1|  112|Caenorhabditis elegans Hypothetical
           protein W03F8.6b protein.
          Length = 112

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -2

Query: 302 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATN 156
           ++  +H +G D       C    +C  D C+         C D  CN++N
Sbjct: 60  SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSN 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,181,108
Number of Sequences: 27780
Number of extensions: 184549
Number of successful extensions: 471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)