Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i17
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.17
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 0.53
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 27 2.8
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 3.8
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 26 5.0
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 26 5.0
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 6.6
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 8.7
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 25 8.7
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 8.7
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 8.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 25 8.7
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.17
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 386 DNDHLISQPVKLKLMNKETDTNKK--LKQIKIENKDPLKQLEHSPIFNSLPDISN-LQCV 556
+ DHL P LKL KE D +K L+ + +E D K+ + + D + L+
Sbjct: 4080 NEDHL-DLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDPLEEN 4138
Query: 557 TFDKKDFEQDDVSDVFNDD 613
+D +QDD SD+ DD
Sbjct: 4139 NTLDEDIQQDDFSDLAEDD 4157
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 29.1 bits (62), Expect = 0.53
Identities = 25/116 (21%), Positives = 47/116 (40%)
Frame = +2
Query: 260 SSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKE 439
+ST K++E + S+G + S +T K L+ + + +
Sbjct: 87 TSTDKDEEEKNDYLLKSNGSKVLRDSTRTKKFKFGKEFHCALNPSFVSDETASDSATSSS 146
Query: 440 TDTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKKDFEQDDVSDVFN 607
+DTNKK+ + K N+ L L FN D + + + + E D+ + F+
Sbjct: 147 SDTNKKVNR-KEHNELSLSHLS----FNDTSDFGSSDLSSSEIESTENDNKAPYFS 197
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 555 THCKFDISGKLLNIGECSSCFKGSLFSILICFNFLFVSVSLFIN 424
+H F L ++G+CS + F + ++LF+ + +IN
Sbjct: 241 SHIAFRYFPWLPHVGDCSGSLFAAFFGCGVLSSYLFLFIGFYIN 284
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.2 bits (55), Expect = 3.8
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Frame = +2
Query: 302 KNSDGPNNVAISRKT---NYLPSAKRKATCLDN--DHLISQPVKLKLMNKETDTNKKLKQ 466
K DG V I T ++ PS + L + + +S LK+ E +K +
Sbjct: 623 KGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAE 682
Query: 467 IKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKKDFEQD 586
+ + + PL+ E + + +PD DK + D
Sbjct: 683 ARKKKESPLEATEETNPWLQVPDQRTSSAKKLDKNSSKAD 722
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 190 LTIF*LKKMFGHKPNITYLLNINS 119
LT F ++ H PN Y +NINS
Sbjct: 130 LTTFLVEPFVPHPPNTEYYININS 153
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 398 LISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
++ +P+K ++ E T + ++I+NKD ++E S
Sbjct: 665 VLKKPLKKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKS 702
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 500 LEHSPIFNSLPDISNLQCVTFDKKDFEQDDVSDVFNDD 613
+ HSP N ++ LQC + D + D+V V +D
Sbjct: 377 IHHSPSRNKKCRVTGLQCASIIPNDSKSDNVVLVSTND 414
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 218 RSAVIYLSMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKAT 379
R VIY + ++ S+++ P F N+ PN + YLPS AT
Sbjct: 31 RYPVIYNASNITEVSNSTTVPPPP---FVNTTAPNGTCLGNYNEYLPSGYYNAT 81
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 510 ECSSCFKGSLFSILICFN--FLFVSVSLFINLSLTGC 406
E + ++FS LICF FL+V+ + F+ L C
Sbjct: 172 EKNMLLSAAIFSALICFKHIFLYVAPAYFVYLLRVYC 208
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 431 NKETDTNKKLKQIKIENKDPLKQLEHSPIFNS 526
NK D+NKK + + PLK+ +SP + +
Sbjct: 306 NKIEDSNKKPSKPSLLQTQPLKRKNYSPWYKN 337
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 449 NKKLKQIKIENKDPLKQLEHSPIFNS 526
NK IE+ P+K+ EH P F +
Sbjct: 506 NKMAYDKSIEDNAPIKKFEHLPFFEA 531
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +2
Query: 236 LSMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATC 382
L KSQE ST N + A N+ G VAI + L S + K C
Sbjct: 277 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL-SPELKENC 324
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 416 KLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
KLK+ K+ + L ++I+N+ +Q+E+S
Sbjct: 52 KLKVFKKDDNVETLLSALEIQNEKSKQQVEYS 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,024
Number of Sequences: 5004
Number of extensions: 43929
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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