Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i17
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 35 0.059
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 33 0.18
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 30 1.7
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 2.2
12_01_0263 + 1925924-1926319,1926565-1927143 29 2.9
11_01_0265 + 2007195-2007590,2007836-2008414 29 2.9
02_02_0060 + 6446317-6446871,6447836-6448276,6449035-6449265,644... 29 3.9
01_04_0139 - 16570515-16571141 29 3.9
12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763... 28 5.1
02_02_0058 - 6423776-6423850,6424302-6424379,6426096-6426156,642... 28 5.1
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 28 5.1
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 34.7 bits (76), Expect = 0.059
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +2
Query: 365 KRKATCL-DNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHSPIFNSLPDIS 541
KRK++ ND L+++ KL+ MNK++ ++KK K KI + Q E + + L D++
Sbjct: 1119 KRKSSKYKSNDDLLNEENKLQKMNKKS-SSKKQKNDKINRQLQEDQTEDDHM-DHLVDVA 1176
Query: 542 NLQCVTFDKKD-FEQDDVSDV 601
VT D +D +D + DV
Sbjct: 1177 VADEVTLDNEDKITEDKIDDV 1197
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 335 SRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQ 499
+++ N + K + +DHL+ Q + L+ +T + KLK+I ++ KD LK+
Sbjct: 1276 AKQKNAVQELVMKGKHVQDDHLMRQEDVVSLLIDDTQISHKLKEISMQAKDRLKK 1330
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 326 VAISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKETD 445
+A+ R+TN P+ ATC+D+ L KL ++ + D
Sbjct: 364 LALQRRTNSRPAQTLAATCMDDQELTESMQKLLIVMQRLD 403
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 29.5 bits (63), Expect = 2.2
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Frame = +2
Query: 218 RSAVIYLSMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDH 397
R+A S++ S + + E + A+ +DG N + S K+N S K LD+
Sbjct: 362 RAAAALPSLEDVSPSHPNSDDEKLGAYVMKNDGRNTLKFSFKSN---STK---PALDSSE 415
Query: 398 LISQPVKLKLMNKETDT---NKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDK 568
+K NK+ N+ K + +++ L++ + SL D + VT DK
Sbjct: 416 QEKNAIKSSGSNKKHSKKKGNQNNKTVSEQDEIFLEKRNETKSLGSLGD--QIADVTRDK 473
Query: 569 KDFEQD 586
F+ D
Sbjct: 474 SSFKND 479
>12_01_0263 + 1925924-1926319,1926565-1927143
Length = 324
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 314 GPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVKLK 424
GP+ + RKTNY K +CL H+IS +++
Sbjct: 235 GPSRLRHRRKTNYRRWRSPKTSCLKEVHVISTAFRIE 271
>11_01_0265 + 2007195-2007590,2007836-2008414
Length = 324
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 314 GPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVKLK 424
GP+ + RKTNY K +CL H+IS +++
Sbjct: 235 GPSRLRHRRKTNYRRWRSPKTSCLKEVHVISTAFRIE 271
>02_02_0060 +
6446317-6446871,6447836-6448276,6449035-6449265,
6449382-6449473,6449555-6449615,6451541-6451618,
6451853-6452014
Length = 539
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 443 DTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKKDFEQDDVSDVFNDD 613
+TNK+L++IK D L +L+H+P S+ + + D +QDD + + D
Sbjct: 371 NTNKQLEEIKCNILDNLSKLQHAP---SVQFEERIPETKLPEPDEDQDDPDERHDPD 424
>01_04_0139 - 16570515-16571141
Length = 208
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 221 SAVIYLSMKKSQESSTSKNQEPITAFFKNSDG 316
SA++ + +KS SST N+ P+ FF ++ G
Sbjct: 135 SALVGVFFRKSPSSSTYHNEAPVRDFFSSNTG 166
>12_01_0826 -
7629892-7629964,7630052-7630135,7630216-7630314,
7630391-7630449,7630804-7630888,7630961-7631058,
7631209-7631355,7631433-7631525,7631642-7631770,
7631859-7631912,7632133-7632309,7632396-7632481,
7634234-7634324,7634433-7634531,7634618-7634694,
7634784-7634952,7639551-7639642,7639712-7639825,
7640933-7641038,7641133-7641183,7641315-7641416,
7642581-7642655,7642768-7642965,7642998-7643123
Length = 827
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/118 (21%), Positives = 54/118 (45%)
Frame = +2
Query: 239 SMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVK 418
++KK + +K+++ + K DG + + +R + + S + A + DHL S +
Sbjct: 115 NLKKEVATQDAKHRKTLGELEKGVDGLFD-SFARLDSRISSVGQTAAKI-GDHLQSAESQ 172
Query: 419 LKLMNKETDTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKKDFEQDDV 592
+ ++ D K L + N P +E SP+F+ ++ + + F ++DV
Sbjct: 173 RETASQTIDLIKYLMEF---NSTPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDV 227
>02_02_0058 -
6423776-6423850,6424302-6424379,6426096-6426156,
6426239-6426330,6426440-6426670,6427510-6427950,
6429037-6429591
Length = 510
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 443 DTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKKDFEQDDVSDVFND 610
+TNK+L++IK D L +L+H+P I + D+ + D+ D +D
Sbjct: 371 NTNKQLEEIKCNILDNLSKLQHAPSVQFQERIPETKLPEPDEDQEDPDERHDPDSD 426
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 404 SQPVKLKLMNKETDTNKKLKQIKIENKDPLKQL 502
S+P L+L + T NK L K + D LKQL
Sbjct: 355 SEPDSLRLSTETTAANKSLLDEKTDRSDGLKQL 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,808
Number of Sequences: 37544
Number of extensions: 214244
Number of successful extensions: 480
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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