Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i17
(616 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000575-1|AAH00575.1| 353|Homo sapiens ISG20L2 protein protein. 31 4.3
AL590666-6|CAI16341.1| 353|Homo sapiens interferon stimulated e... 31 4.3
AK022733-1|BAB14212.1| 353|Homo sapiens protein ( Homo sapiens ... 31 4.3
Y08890-1|CAA70103.1| 1097|Homo sapiens Ran_GTP binding protein 5... 30 7.5
BC045640-1|AAH45640.1| 1115|Homo sapiens RAN binding protein 5 p... 30 7.5
BC019309-1|AAH19309.1| 1097|Homo sapiens RANBP5 protein protein. 30 7.5
BC001497-1|AAH01497.1| 1097|Homo sapiens RANBP5 protein protein. 30 7.5
AL356580-2|CAI13757.1| 1097|Homo sapiens RAN binding protein 5 p... 30 7.5
AL162571-2|CAI39591.1| 1298|Homo sapiens TBC1 domain family, mem... 30 7.5
AL139230-1|CAH70991.1| 1298|Homo sapiens TBC1 domain family, mem... 30 7.5
AL137120-1|CAI16520.1| 1097|Homo sapiens RAN binding protein 5 p... 30 7.5
>BC000575-1|AAH00575.1| 353|Homo sapiens ISG20L2 protein protein.
Length = 353
Score = 30.7 bits (66), Expect = 4.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 329 AISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKETDTNK 454
+++R T+++P RKA C +N + + + KL+N++ K
Sbjct: 278 SLTRDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGK 319
>AL590666-6|CAI16341.1| 353|Homo sapiens interferon stimulated
exonuclease gene 20kDa-liker), member 1 (antiporter,
Na+/ protein.
Length = 353
Score = 30.7 bits (66), Expect = 4.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 329 AISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKETDTNK 454
+++R T+++P RKA C +N + + + KL+N++ K
Sbjct: 278 SLTRDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGK 319
>AK022733-1|BAB14212.1| 353|Homo sapiens protein ( Homo sapiens
cDNA FLJ12671 fis, clone NT2RM4002323, weakly similar to
ANTIGEN GOR. ).
Length = 353
Score = 30.7 bits (66), Expect = 4.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 329 AISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKETDTNK 454
+++R T+++P RKA C +N + + + KL+N++ K
Sbjct: 278 SLTRDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGK 319
>Y08890-1|CAA70103.1| 1097|Homo sapiens Ran_GTP binding protein 5
protein.
Length = 1097
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 380 CLDNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
CL+N+H LK +E N++L+Q+K +++D +Q+E S
Sbjct: 784 CLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEES 827
>BC045640-1|AAH45640.1| 1115|Homo sapiens RAN binding protein 5
protein.
Length = 1115
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 380 CLDNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
CL+N+H LK +E N++L+Q+K +++D +Q+E S
Sbjct: 802 CLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEES 845
>BC019309-1|AAH19309.1| 1097|Homo sapiens RANBP5 protein protein.
Length = 1097
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 380 CLDNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
CL+N+H LK +E N++L+Q+K +++D +Q+E S
Sbjct: 784 CLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEES 827
>BC001497-1|AAH01497.1| 1097|Homo sapiens RANBP5 protein protein.
Length = 1097
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 380 CLDNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
CL+N+H LK +E N++L+Q+K +++D +Q+E S
Sbjct: 784 CLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEES 827
>AL356580-2|CAI13757.1| 1097|Homo sapiens RAN binding protein 5
protein.
Length = 1097
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 380 CLDNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
CL+N+H LK +E N++L+Q+K +++D +Q+E S
Sbjct: 784 CLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEES 827
>AL162571-2|CAI39591.1| 1298|Homo sapiens TBC1 domain family, member 4
protein.
Length = 1298
Score = 29.9 bits (64), Expect = 7.5
Identities = 27/103 (26%), Positives = 46/103 (44%)
Frame = +2
Query: 263 STSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKET 442
S + +EP+ F D P + +K+ L S RKA I Q + L M KE
Sbjct: 809 SPTMEEEPLVVFLSGEDDPEKIEERKKSKELRSLWRKA--------IHQQILLLRMEKE- 859
Query: 443 DTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKK 571
N+KL+ + E + +L++ + ++ +T+DKK
Sbjct: 860 --NQKLEASRDELQSRKVKLDYEEVGACQKEV----LITWDKK 896
>AL139230-1|CAH70991.1| 1298|Homo sapiens TBC1 domain family, member 4
protein.
Length = 1298
Score = 29.9 bits (64), Expect = 7.5
Identities = 27/103 (26%), Positives = 46/103 (44%)
Frame = +2
Query: 263 STSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKET 442
S + +EP+ F D P + +K+ L S RKA I Q + L M KE
Sbjct: 809 SPTMEEEPLVVFLSGEDDPEKIEERKKSKELRSLWRKA--------IHQQILLLRMEKE- 859
Query: 443 DTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKK 571
N+KL+ + E + +L++ + ++ +T+DKK
Sbjct: 860 --NQKLEASRDELQSRKVKLDYEEVGACQKEV----LITWDKK 896
>AL137120-1|CAI16520.1| 1097|Homo sapiens RAN binding protein 5
protein.
Length = 1097
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 380 CLDNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHS 511
CL+N+H LK +E N++L+Q+K +++D +Q+E S
Sbjct: 784 CLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEES 827
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,792,565
Number of Sequences: 237096
Number of extensions: 1290539
Number of successful extensions: 3080
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -