Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i17
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    31   0.49 
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    29   2.0  
Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    28   4.6  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical...    27   8.1  
AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein ( Cae...    27   8.1  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
 Frame = +2

Query: 239  SMKKSQESSTSKNQEPI---TAFFKNSDGPNNVAISR-KTNYLPSAKRKAT---CLDNDH 397
            S KK    S S+ Q PI    +          V + + K N+     +  T   CLD   
Sbjct: 4341 SSKKQNRKSKSQRQIPICIRNSLKYGGTAEKKVIVEQSKFNFQKLNTKLQTFFECLDEYI 4400

Query: 398  LISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKKDF 577
             +  P+KL   +K T   KK+  +K +  DP+     SP  N+  D S+     +   D 
Sbjct: 4401 DVGTPIKLVFSSKNTILPKKMFDVKTKLIDPVYYTSPSPC-NTDSDFSDNTPDDYKSSDL 4459

Query: 578  EQ 583
            +Q
Sbjct: 4460 KQ 4461


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 239 SMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVK 418
           S + SQE+ TS+NQE I       D P      R     P+ KR     +++     PV+
Sbjct: 50  SREVSQETETSENQEKIKEKDDGDDQPGTPNSYRSRETSPAPKRSKETRESESPEKSPVR 109


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 239 SMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVK 418
           S + SQE+ TS+NQE I       D P      R     P+ KR     +++     PV+
Sbjct: 50  SREVSQETETSENQEKIKEKDDGDDQPGTPNSYRSRETSPAPKRSKETRESESPEKSPVR 109


>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14  KTTTTTMAMIVHIFIYYLCCEYVHT-YWDINIKCIRGINV 130
           K T    ++I+  + +Y+CC  + +  W INI     IN+
Sbjct: 150 KYTILAFSVIMEFYHFYMCCWNISSNLWPINILLCTAINI 189


>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical protein
            ZC376.6 protein.
          Length = 1152

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +2

Query: 461  KQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFDKKDFE 580
            K ++IEN+    +++H  + +++   + L C+  D+K+ E
Sbjct: 892  KMVRIENRLKTMEIQHKAMASAIAHKNTLYCLELDRKEKE 931


>Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical
           protein F09F3.1 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -2

Query: 546 KFDISGKLLNIGECSSCFKGSLFSILICFNFLFVSVSLFINLSLTGCEIK*SLSR 382
           KF  S K LN G    CF  ++ + ++C +FLF +V + I  +LT  ++   L+R
Sbjct: 42  KFATSWKTLN-GFKKLCFMKTIANSIVCCSFLFFAVPV-ICATLTFSQVNYYLNR 94


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
           with protein 1 protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
 Frame = +2

Query: 239 SMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLISQPVK 418
           SM+ +   STS    P  +    +D P     S + +Y  S +++  CL  D  +  P+ 
Sbjct: 41  SMEPAAGGSTSMRYSPSGS--SEADNPTLGLFSAQASYPYSLRKRRPCLTKDEDLCFPIT 98

Query: 419 LKLMNKETDTNKKLKQIKIENKDPLK----QLEHSPIFNSLPDISNLQCVTFDKKDFEQD 586
               + ET     +K+ K+E   P +     +E     N    +   +C   +++  E++
Sbjct: 99  AATAD-ET-PQPTMKKFKLECLSPGEARDFSIEDESGTNLEAKMETTECEPEEEEAVEEE 156

Query: 587 DVSDVFN 607
           D  D  N
Sbjct: 157 DQQDHIN 163


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
 Frame = +2

Query: 224 AVIYLSMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLI 403
           A IY S   S+ SS S +  P     +++   +        ++LP    + +    + L+
Sbjct: 94  ARIYFSNTSSEHSSRSNSSTPRRV--RHTTASSGYG---SLSHLPPISYRKSSDPLNSLM 148

Query: 404 SQPVKLKLMNKETDTNK--KLKQIKIENKDPLKQ-LEHSPIFNSLPD-ISNLQCVTFDKK 571
           SQ + ++      D  K   L Q ++  +D  +  +  SP   +L D +      TFD  
Sbjct: 149 SQSMYVQSPGMHIDEPKCTSLSQRRLYYEDSSETYIPSSPSLTTLKDFMMTNDDETFDDF 208

Query: 572 DFEQDDVSDVFN 607
           DF+ DDV  V +
Sbjct: 209 DFDNDDVKSVIS 220


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
 Frame = +2

Query: 224 AVIYLSMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDNDHLI 403
           A IY S   S+ SS S +  P     +++   +        ++LP    + +    + L+
Sbjct: 94  ARIYFSNTSSEHSSRSNSSTPRRV--RHTTASSGYG---SLSHLPPISYRKSSDPLNSLM 148

Query: 404 SQPVKLKLMNKETDTNK--KLKQIKIENKDPLKQ-LEHSPIFNSLPD-ISNLQCVTFDKK 571
           SQ + ++      D  K   L Q ++  +D  +  +  SP   +L D +      TFD  
Sbjct: 149 SQSMYVQSPGMHIDEPKCTSLSQRRLYYEDSSETYIPSSPSLTTLKDFMMTNDDETFDDF 208

Query: 572 DFEQDDVSDVFN 607
           DF+ DDV  V +
Sbjct: 209 DFDNDDVKSVIS 220


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 488 PLKQLEHSPIFNSLPDISNL 547
           PLK+++ +P+  SLPD++NL
Sbjct: 504 PLKRIQDTPLQFSLPDLANL 523


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 488 PLKQLEHSPIFNSLPDISNL 547
           PLK+++ +P+  SLPD++NL
Sbjct: 493 PLKRIQDTPLQFSLPDLANL 512


>AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical
           protein Y62E10A.2 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 239 SMKKSQESSTSKNQEPITAFFKNSDGPNNVAISRKTNYLPSAKRKATCLDN 391
           S K+  E +    + P     K S  PN++ I+RKTN    +K     L+N
Sbjct: 8   SSKRFDEKTNEMRRRPPV---KPSSNPNHIYITRKTNVESQSKSTEEMLNN 55


>AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA, partial cds. ).
          Length = 118

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 488 PLKQLEHSPIFNSLPDISNL 547
           PLK+++ +P+  SLPD++NL
Sbjct: 97  PLKRIQDTPLQFSLPDLANL 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,928,351
Number of Sequences: 27780
Number of extensions: 238738
Number of successful extensions: 796
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)