Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i17
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.78 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +2

Query: 317  PNNVAISRKTNYLPSAKRKATCLDNDHLISQPVKLKLMNKETDTNKKL-----KQIKIEN 481
            P  ++ISR  +    + R +T LD     S+  ++    ++ D ++K      +Q + + 
Sbjct: 1398 PTPLSISRAGSRDEDSTRDSTKLDRS---SREREVHNGGQQEDRDRKTLTSAPQQPQQQQ 1454

Query: 482  KDPLKQLEHSPIFNSLPDISNLQCVTFDKK 571
            +   +Q +     N  PD+ NL  V  DKK
Sbjct: 1455 QQQQQQQQQQQQLNHYPDLHNLYAVPTDKK 1484


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 59  YYLCCEYVHTYWDINI 106
           Y   CEY HT+W  +I
Sbjct: 155 YTPVCEYDHTWWPYDI 170


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +2

Query: 386 DNDHLISQPVKLKLMNKETDTNKKLKQIKIENKDPLKQLEHSPIFNSLPDISNLQCVTFD 565
           +N H      KL  +  E+D +K++   K EN   + +L +        + SN+ C+ F+
Sbjct: 64  NNHHCNQDTEKLNQLEIESDNSKEVNDKKEEN-FIVDRLRNDLFECENKEKSNV-CLKFE 121

Query: 566 KKDFEQDDVSDV 601
           ++   +  + DV
Sbjct: 122 EQKRRKKSLDDV 133


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 501 SCFKGSLFSILICFNFLFVSVSLFI 427
           SC  G +  +L  FNF+F    L I
Sbjct: 2   SCGMGMIKYLLFIFNFVFAVCGLGI 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,927
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)