Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i16
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 34 0.095
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 34 0.13
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 32 0.51
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 31 1.2
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 30 1.5
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 30 2.0
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 29 3.6
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 29 4.7
12_02_0189 + 15165485-15168694 28 8.3
10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667... 28 8.3
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 28 8.3
06_03_0232 - 18507872-18508792 28 8.3
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 28 8.3
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 34.3 bits (75), Expect = 0.095
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Frame = +3
Query: 30 CNIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSI 209
C+++F + +LQ +T++++ S+ + +D +P+E + + + D +
Sbjct: 223 CSVEFSCFLG--HLQCSTLVTVTSSSL-SDGMPEE-----CFFSVPELQDSVDGDAGVGV 274
Query: 210 DLPLTTPEQKDDFMNAIKPFETLN-IESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYT 386
D+ +T E A+ F ++ +E D + D A +GDD+ N +EDE
Sbjct: 275 DIRITIDE-------AVPLFSCVDGMEDDDDEDCDDDVDANNGDDDENDGDTSDDEDEDD 327
Query: 387 VDGLKL 404
DG KL
Sbjct: 328 EDGTKL 333
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +3
Query: 162 LNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDD 341
++ + +E DDD+ +++ TPE + + ++ L +E DI++++ D P GD
Sbjct: 289 MDDIDDEYDDDDDDDLNMRDATPEPDELDQDIVE--SDLELEGDIVESDHQDPPQKMGDP 346
Query: 342 NNNRKVVDANED 377
+ + V + N D
Sbjct: 347 SID--VTEENRD 356
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 153 TLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ--TDAPA 326
TLR + ++C D L P+ + M+ I+ + +E KT ++
Sbjct: 354 TLRAQKIVKKCPSCPTDICDF-LENPQINREMMDLIESLQRKAVEEGDTKTSSDVSNGAE 412
Query: 327 TSGDDNNNRKVVDANEDEYTVDGLKLK 407
+SGDD NN + +D D LK
Sbjct: 413 SSGDDGNNEALEKGEDDSSLKDDGSLK 439
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +3
Query: 150 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPAT 329
+TL S+P+ D+ + D P+ +PE+ + ++ P T+ I+ I ++ T+A
Sbjct: 565 ITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSSYTP--TIPIKESSIVSQNTNAENV 622
Query: 330 SGD 338
SGD
Sbjct: 623 SGD 625
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 228 PEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKV-VDANEDEYTVDGLKL 404
PE+K DF+ A + ++ +I + E ++ G+D +KV +D ED + KL
Sbjct: 1331 PEEKVDFIGASESLDSSSIADHELPDESSEKEVNMGEDEGKKKVELDDWEDAAEMSTPKL 1390
Query: 405 K 407
+
Sbjct: 1391 E 1391
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 234 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKS 410
Q+DD N + T N++ D + T P TS +NR ED G+ ++S
Sbjct: 194 QQDDLANLVDERNTENLQKDAMATSDFQQPCTS----DNRCFDQRQEDSINTVGVNIRS 248
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +3
Query: 234 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKS 410
Q+DD N + T N++ D + T P TS NR ED G+ ++S
Sbjct: 181 QQDDLANLVNESNTGNLQKDAMATPDFHQPCTS----ENRCFDQPQEDSINAVGVNIRS 235
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 291 DIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKIL 446
+I+K +TD +GD N +++D E ++ L+ Y K +KIL
Sbjct: 438 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 489
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 270 ETLNIESDIIKTEQTDAPATSGD-DNNNRKVVDANEDEYTVDG 395
E+ E D + D+ + S D D+++ VVD+ ED+ +DG
Sbjct: 961 ESSQTEDDQYEPSDADSCSESDDEDSDSESVVDSGEDDGAMDG 1003
>10_02_0200 -
6672743-6673717,6676257-6676634,6677017-6677301,
6677420-6677570,6677696-6677930,6678689-6678764
Length = 699
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +3
Query: 363 DANEDEYTVDGLKLKSKYVAYYKCLKILV-------DFLVMYVSKETNMKEYEQVYTLGR 521
+++ D+Y +DG+++ K + K +K++V D V KE +++ + + GR
Sbjct: 416 NSSRDDYVIDGMRIYVKIPSIAKTIKLIVKNSNSVADVKVEIERKEGILQDNQMLMYAGR 475
Query: 522 QL 527
QL
Sbjct: 476 QL 477
>08_01_0783 +
7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 201 FSIDLPLTTPEQKDDFMNAIKPFETLNIESDI--IKTEQTDAPATSGDDNNNRKVVDANE 374
F I L E + +N +TL++++ + ++QT A SGD + N
Sbjct: 254 FQIAFDLVENENQAFLLNVKNHLDTLSLQTSAQTLPSDQTAATEPSGDAQMTDDAITPNG 313
Query: 375 DEYTVD 392
+ +TVD
Sbjct: 314 NAHTVD 319
>06_03_0232 - 18507872-18508792
Length = 306
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 471 SKETNMKEYEQVYTLGRQLYEVLRSIFVDEPFKLWLERNTHEFDNNTD 614
SKE + ++VY + YE R++ + P + E ++H D++ D
Sbjct: 211 SKEVSDDSEDEVYVDPLEAYEAARNVAGEGPSTYFNEESSHSDDDDND 258
>04_04_0827 -
28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 147 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDII 299
+VT +L S E C+ D + P+ ++KDD P + +IE D++
Sbjct: 566 SVTTKLLSY-ETCSVSDGINPASPINENKKKDDLSYGHVPMHSQSIEHDVV 615
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,171
Number of Sequences: 37544
Number of extensions: 327359
Number of successful extensions: 1065
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -