Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i15
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0948 - 29592554-29592776,29594494-29594693 31 1.2
06_03_0416 + 20568087-20568702,20568767-20570313 30 1.6
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 29 3.7
08_02_0060 - 11789220-11789259,11790383-11790789 29 3.7
11_08_0076 + 28178354-28178610,28179504-28179600,28179720-281797... 29 4.8
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 29 4.8
01_05_0290 - 20487105-20487113,20487171-20487213,20488336-204884... 29 4.8
02_05_0349 - 28172347-28172521,28172672-28172817 28 6.4
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 28 8.5
>04_04_0948 - 29592554-29592776,29594494-29594693
Length = 140
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 374 DECSWCNKGITSESGALQHAGAT-FCSELCFSQSRRANFKRAKTCDWCRHVRHTVAYV 544
D C+ C K +T +S + G T FCSE C + + + A+ R R + Y+
Sbjct: 25 DACALCTKQLTRDSDIFMYKGDTPFCSEECRYEQMQLDAVYARCVKRLRITRCVLLYM 82
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 554 DGATQLQFCSDKCLNQYKMHIFCRETQAHLDLNP 655
D T+L+ SD +H CR+T AHLD+ P
Sbjct: 572 DWKTRLKIISDVAKALAYLHSDCRQTIAHLDIKP 605
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = -1
Query: 426 WSAPLSLVIPLLHHEHSSLF 367
+S +S+++P+LHH+H SL+
Sbjct: 625 FSTSISIMVPVLHHDHWSLY 644
>08_02_0060 - 11789220-11789259,11790383-11790789
Length = 148
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +1
Query: 412 KRRAPTRGSNLLLGIVFQSIQEG*FQTRQDMRLVSAR*TYCCLRRLPGWSHAATVLFRQV 591
+RRA G L+ +V Q+ ++ F + + R L R PGWS AA +
Sbjct: 51 QRRAADAGGELMRVLVHQT-RDAAFSAEDALDDYAVR---VDLSRYPGWSRAAVGFLAGI 106
Query: 592 PQSIQDAHILSRDTGA 639
++ H LS D A
Sbjct: 107 TTQLRVRHRLSSDIAA 122
>11_08_0076 +
28178354-28178610,28179504-28179600,28179720-28179779,
28180071-28180151
Length = 164
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 284 GYERLELRRWAASR--AKDASSPEQSNEQKNKDECSWCNKGITSESGALQHAGATFCSEL 457
G +R E AA + A A+ PEQ ++ K E + +SGA+ G E
Sbjct: 26 GKQRAEAPAKAAKKEAAAAAAPPEQKGRKRAKKEDAQVAAAAEKDSGAVVSDGKRIVVEA 85
Query: 458 CFSQSRRANFKRAK 499
C +Q R+ + AK
Sbjct: 86 C-TQCRQFKIRAAK 98
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 541 RRLPGWSHAATVLFRQVPQSIQDAHILSRDTGAPRPQPASGQRFVIVQSYHTRSL 705
RR+P + +Q I+ A ++ TG RP P+ R +IV RS+
Sbjct: 446 RRIPPGIAVQALASQQSKLQIRPAAAAAKGTGGCRPDPSQTPRKIIVSGSRARSV 500
>01_05_0290 -
20487105-20487113,20487171-20487213,20488336-20488412,
20489096-20489163,20489266-20489456,20490687-20490798,
20490892-20490943,20491984-20492076,20493065-20493211,
20493381-20493410,20493764-20493862,20495188-20495322,
20495420-20495498,20495989-20496064,20496345-20496423,
20496513-20496547,20497185-20497259,20497405-20497804
Length = 599
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 414 AARSNTREQPSARNCVSVNPGGLISNAPRHATGVGTLDILLPT*TSRMEPRSYSFVQTSA 593
A R+ + P RN + +NP L SNA H G + LL + + +FV+ +
Sbjct: 124 AQRNPDADAPGGRNRLRINPRFLHSNATSHKWAFGAIAELLDNAIDEVNTGA-TFVRVNE 182
Query: 594 SINTR 608
N R
Sbjct: 183 FTNPR 187
>02_05_0349 - 28172347-28172521,28172672-28172817
Length = 106
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 374 DECSWCNKGITSESGALQHAGAT-FCSELC 460
D CS C K +T + G T FCSE C
Sbjct: 30 DACSLCRKPLTRNCDIFMYRGNTPFCSEEC 59
>11_03_0146 +
10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/16 (50%), Positives = 15/16 (93%)
Frame = -1
Query: 414 LSLVIPLLHHEHSSLF 367
+S+++P+LHH+H SL+
Sbjct: 650 VSIIVPVLHHDHWSLY 665
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,066
Number of Sequences: 37544
Number of extensions: 335902
Number of successful extensions: 1057
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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