Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i15
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      29   3.7  
SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                29   3.7  
SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 578  CSDKCLNQYKMHIFCRETQAHLDLNPHLV 664
            CS +C+  + +   C  ++AH+D+ PH V
Sbjct: 1151 CSYRCVPHHALMSMCSPSRAHVDVFPHRV 1179


>SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 457 VFQSIQEG*FQTRQDMRLVSAR*TYCCLRRLPGWS 561
           V +++ +G  + + D R+V AR   CC+R  P WS
Sbjct: 50  VVEAVNQGFLRGQVDFRVV-ARSILCCMRHEPDWS 83


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 324 EQKTLPALNNLMNRRIKMNVRGVTKVLRAKAARSNTREQPSAR 452
           + +TLPA   L NRR     + V+    A+A++ +    P+AR
Sbjct: 27  QHRTLPACYQLCNRRYVSTNKPVSAAAAAQASQKSASSPPAAR 69


>SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 317 ASRAKDASSPEQSNEQKNKDECS-WCNKGITSESGALQHAGATFCSELCFSQSRRANFKR 493
           A +  + + P+QS E     E S +     T ++  L + GA   + + ++ SR  N   
Sbjct: 504 ALKLYNQTRPKQSLESMRTTELSDYYIPSKTQKNADLAYIGAGALA-IGYTASRLLNGDF 562

Query: 494 AKTCDWCRHVRHTVAY 541
            + C+WCR + +   Y
Sbjct: 563 KRQCEWCRDIVYAYTY 578


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 28/120 (23%), Positives = 47/120 (39%)
 Frame = +3

Query: 264 TNFLAGTVTRGWSLGGGPPREQKTLPALNNLMNRRIKMNVRGVTKVLRAKAARSNTREQP 443
           T F     +   S   G  +   T P  ++ ++          T    A  A + T E  
Sbjct: 262 TRFSTVKTSTKTSTRAGLTKAATTSPNSSSSLSTGKARTTEATTTGTTAATATTGTTEAL 321

Query: 444 SARNCVSVNPGGLISNAPRHATGVGTLDILLPT*TSRMEPRSYSFVQTSASINTRCTYSV 623
           S+++ +S       + +   AT +       PT T++  P S  FV + ASINT  T ++
Sbjct: 322 SSQSVIS----NASTTSTTSATTIAATGATTPTDTTQATPSS--FVTSDASINTATTATI 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,342,066
Number of Sequences: 59808
Number of extensions: 385159
Number of successful extensions: 1147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)