Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i15
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 311 WAASRAKDASSPEQSNEQKNKDE 379
           W A+ AKD+SS + S+E  N D+
Sbjct: 22  WEAAGAKDSSSDDSSDESDNDDQ 44


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 215 KKENEEEIKDFAETAMNELLGWYGYERLELRRWAASRAKDASSPEQSNEQKNKD 376
           K+++E+E K   E    E      ++ +E +R A +RAK     +Q  +QKN+D
Sbjct: 287 KEKHEQEEKQKKENL--ERAEKERHDHIERQRQAEARAKALEQEKQEEKQKNED 338


>Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical
           protein F22G12.4 protein.
          Length = 861

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 401 ITSESGALQHAG---ATFCSELCFSQSRRANFKRAKTCDWCRHVRHT 532
           +TS     +H G    + CSE     ++    KR + CD C HV  T
Sbjct: 809 LTSRKHHCRHCGRHVCSKCSETTMPIAKYGEEKRVRVCDVCAHVIST 855


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,137
Number of Sequences: 27780
Number of extensions: 282983
Number of successful extensions: 961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)