Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i15
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.54 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 167 LKMDNNSSTKTPPLGVKKENEEEIKD 244
           LK D N S  +PP+  K++  +E ++
Sbjct: 610 LKTDTNQSCPSPPVTTKRDGTQETEE 635


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 644 LGAPVSRDRICASCID*GTCLNKTV 570
           L + VS D  C+S +D  T +NK V
Sbjct: 918 LSSCVSNDGGCSSLVDVSTPVNKKV 942



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 176 DNNSSTKTPPLGVKKENEEEIKDF 247
           D+ SST+TPP   +    E I+ F
Sbjct: 531 DSKSSTETPPSYNQLNYNENIERF 554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,931
Number of Sequences: 438
Number of extensions: 3259
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)