Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i14
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    27   2.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   4.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 495 VICDNLKYTEGFTSGTQRVIHSVYATTRSILDTTNPNTFCSRVSRDE 635
           VICD L Y +GF         S+Y TT  ++    P   C + + ++
Sbjct: 83  VICDALNYIKGFRYQLYCESKSMY-TTHCVIHVAVPQDLCRKFNSNK 128


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 117 MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 230
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 378  KRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEGFTSGTQRVIH 557
            KR+L+    N   VFN   +   +Q+   +   N +  +V CD   ++ GF     +++H
Sbjct: 1103 KRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKEFSVYCD--AHSIGFL--VSKLLH 1158

Query: 558  SVY-----ATTRSILDT 593
              +      T RSI+D+
Sbjct: 1159 YEFYEVQLTTLRSIVDS 1175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,541
Number of Sequences: 5004
Number of extensions: 59591
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)