Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i14
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33835| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   3.7  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            29   3.7  
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      28   6.5  
SB_36256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   8.6  

>SB_33835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +2

Query: 497 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNASR 676
           Y R+ ++Y R ++ +A +Y    R Y+ ++R ++     +   AR+   + R  R   + 
Sbjct: 85  YARRYRLYARQYRLYARQYRLYDRQYRLYARQYRLYDRQYRLYARQYRLYARQYRVIRAD 144

Query: 677 WCWRSIILT 703
           + WR+  +T
Sbjct: 145 FFWRARRIT 153



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +2

Query: 497 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNASR 676
           Y  + ++Y R ++ +A +Y    R Y+ + R ++     +   ARR   + R  R  A +
Sbjct: 43  YALKYRLYARQYRLYARQYRLYARQYRLYDRQYRLYARQYRLYARRYRLYARQYRLYARQ 102

Query: 677 W 679
           +
Sbjct: 103 Y 103


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 222 DAYHD-DGWFICNSHLIKRFKMSKMVLP--IFDEDDNQFKMTIARHLVGNKER 371
           DA  D  GW++    L+K+F+ S+M     + D+D   ++  +   L  NKE+
Sbjct: 186 DASSDFKGWYLLKKQLLKKFENSRMATKKLVSDDDGTPYRKKMKLSLKVNKEQ 238


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 180 SFDACITYKSPC-SPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLV 356
           SFD+ I   +P    ++ H  G  I  S +      S  V  IFD+DD    +T+ R+  
Sbjct: 316 SFDSGIVQNNPSFKSNSLHSVGQRITTSTITP----STTVNLIFDDDDGDGGLTVTRYAS 371

Query: 357 GNKERGI 377
           GN   G+
Sbjct: 372 GNAFSGV 378


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 234 DDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSA 401
           DD  F  NS   KR     + L +F +    F +T A  ++G+K R + R+LIP +
Sbjct: 141 DDAGFGPNSST-KRRPTFPVDLNLFQDLYMHFNLTEANLVLGSKVRNVLRVLIPKS 195


>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 497 YMRQSKIYRRF---HKRHATRYTQRLRNYKKH 583
           YMR    Y R    + RH TRYT+ + +Y +H
Sbjct: 7   YMRHVTRYTRHFTRYMRHVTRYTRHVTHYTRH 38


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 497 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKP 601
           YMRQ   Y R H  +  ++ +R R+Y +    H P
Sbjct: 609 YMRQPTYYMRQHTHYMRQHLRRPRHYMRQLYTHYP 643


>SB_36256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
 Frame = +3

Query: 429 NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTE---GFTSGTQRVIHSVYATTRSILDTTN 599
           NSM+ +E +  + +YNN++ VN +   +   E   G    +   +  V  T   +    N
Sbjct: 23  NSMVASELMEIYSMYNNDKDVNKVISLIPEVERGLGSIITSNMSLSDVRETLGQLEVLLN 82

Query: 600 PNTFCSRVSRDELRFFDVTNA----RTHRGGVGDQL 695
            +     +  D+ R F+ TN     R  RGG   QL
Sbjct: 83  SSMDSRLICADKPRLFNQTNQAYRYRRPRGGARYQL 118


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 515 IYRRFHKRHATRYTQRLRNYKKHSRHHKPEH 607
           I R  H++H  R+ +   +++    HH P H
Sbjct: 185 ILRHRHRQHYNRHRRHHHHHRHRHHHHHPNH 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,292,485
Number of Sequences: 59808
Number of extensions: 454788
Number of successful extensions: 1213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)