Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i13
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    31   0.22 
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    30   0.29 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   0.51 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.51 
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    29   0.67 
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    27   2.7  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   4.7  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.3  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    25   8.3  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   8.3  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   8.3  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.3  

>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 426 RFCRSVSFDPSLV-GFTPFFLNGSVRFPGKVHKI 328
           RFCR+  FDP  V GF PFFL     F GK   +
Sbjct: 407 RFCRAF-FDPQQVPGFNPFFLLHGNPFTGKTKAV 439


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 290 EIESPSQNYRNGKILWTFPGNLTEPFKKNGVNPTSE 397
           EI  P ++  N  + + FP   TEPF+KN V+   E
Sbjct: 209 EILDPGES-TNKNLFYEFPNGTTEPFEKNSVHSGKE 243


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 539 DSYPLPKGHTTPLEEYDYIIVGGG---TSGSVLASRLTED 649
           D  P+ K  TTPL EYD   VG G   T+GSVL +   ED
Sbjct: 575 DFEPIMKLDTTPLLEYD---VGSGVPMTAGSVLETESEED 611


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 196 YEYPQNRKFH-CSHFRAANATMEN 128
           YEYPQ  KFH CS F +  +++ N
Sbjct: 219 YEYPQQSKFHECSQFASPRSSIVN 242


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 584 YDYIIVGGGTSGSVLASRLTEDKPKATVLVIEA 682
           +DY+++GGG+ G  LAS     K  A V +IEA
Sbjct: 8   FDYLVIGGGSGG--LASARRAAKHGAKVALIEA 38


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 581 EYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEA 682
           E D +IVG G++G   A  +   +P   + +IEA
Sbjct: 76  ESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEA 109


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 504 PRIHTILSTFYEIRILYLKDIQHHLKSMIIS 596
           PR   +L++FY +  L+L    H L+  IIS
Sbjct: 332 PRSSWVLASFYSLHFLWLCTFFHALQCAIIS 362


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 129 IYSKNIYLLYYSDPASRLYCGSSRSVVFEFLLD 31
           IYS++++    SD   RL       ++F+FLLD
Sbjct: 301 IYSRSLFEYQLSDEDFRLQAILQLIIIFDFLLD 333


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 581 EYDYIIVGGGTSGSVLASR 637
           EYD  ++GGG  G V A R
Sbjct: 45  EYDLCVIGGGPGGYVAAIR 63


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 299 SPSQNYRNGKILWTFPGNLTEPFKKNGVNPTSEGS 403
           SPS+N +  KIL   P   ++  KK+ + PT + S
Sbjct: 621 SPSKNQKPPKILTKIPDIFSKAGKKSPILPTFQES 655


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -2

Query: 204 WYAMNIHKTENFIVPIFELQMQQWKIYSKNIYL 106
           W A   H+TE+ +  + EL++    IY++++++
Sbjct: 180 WIASKFHETEDRVPLLQELKLACKNIYAEDLFI 212


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 380 VNPTSEGSKLTERQKRFLLWSYPQSPLVDMI 472
           ++  S  +KL   QK+FL+W +  + L D +
Sbjct: 724 IDEVSSYAKLGNSQKKFLIWCFKVAELDDTL 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,847
Number of Sequences: 5004
Number of extensions: 63897
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)