Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i13
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 39 0.005
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 38 0.006
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 38 0.011
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 37 0.019
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 37 0.019
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.033
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 35 0.075
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 29 2.8
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638... 29 2.8
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 29 3.7
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 29 4.9
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 6.5
11_06_0718 - 26592786-26593856,26597401-26597451,26597977-265984... 28 8.6
04_04_0144 - 23095172-23095830,23095915-23097265 28 8.6
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 578 EEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
E YDYIIVGGGT+G LA+ L++ K VL++E G
Sbjct: 48 EAYDYIIVGGGTAGCPLAATLSQ---KYKVLLLERG 80
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = +2
Query: 545 YPLPKGHTTPLEEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
Y + T E YDYI+VGGGT+G LA+ L VLV+E G
Sbjct: 42 YVVDAAETAAEEAYDYIVVGGGTAGCPLAATLA-GPGGGRVLVLERG 87
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 518 DPFDFLRDSYPLPKGHTTPLEEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
+ + F++D+ P+ + YDYIIVGGGT+G LA+ L++ + VL++E G
Sbjct: 32 ESYTFMKDAVQSPQ-----VSYYDYIIVGGGTAGCPLAATLSQ---RFRVLLLERG 79
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 36.7 bits (81), Expect = 0.019
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 533 LRDSYPLPKGHTTPL---EEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
LR+ L K + P E YDYI+VGGGT+G LA+ L+ K VL++E G
Sbjct: 31 LRNLPTLQKASSFPAMRHETYDYIVVGGGTAGCPLAATLS---LKYKVLLLERG 81
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 584 YDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
YDYII+GGGT+G LA+ L+E + VL++E G
Sbjct: 43 YDYIIIGGGTAGCPLAATLSE---RYRVLLLERG 73
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 35.9 bits (79), Expect = 0.033
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +2
Query: 584 YDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
Y+YI+VGGGT+G LA+ L+E ++ VL++E G
Sbjct: 57 YNYIVVGGGTAGCPLAATLSE---RSRVLLLERG 87
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 34.7 bits (76), Expect = 0.075
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +2
Query: 575 LEEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
+ Y+YI++GGGT+G LA+ L+E + VL++E G
Sbjct: 51 VSSYNYIVIGGGTAGCPLAATLSE---HSRVLLLERG 84
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -1
Query: 178 RKFHCSHFRAANATMENIF*KYLFIILFRSRVPSLLRIVEKCCIRILTGC 29
RKFH + N + +F + ++ VP+L+++ C+R GC
Sbjct: 424 RKFHWRRYNLKNTDVAAVFLTKFYKTTYKEHVPNLVQLTMP-CMRYKVGC 472
>02_04_0113 -
19861904-19862197,19862338-19862496,19862580-19863833,
19864086-19864124
Length = 581
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -1
Query: 388 RVHAIFFKWLGKVSRKSPQDFAVSIILGRRFDFLQNVLCI 269
R H +F +W+ +SRK P+ + G + N+ +
Sbjct: 132 RYHDVFDRWMYMLSRKKPRSITIKFYSGHNYKIPSNLFSL 171
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 654 GLSSVRREAKTDPDVPPPTMI*SYSSSGVVCPLGRGYESRKKSKGS 517
G +++ R A P PPP + + + + CP G Y R + S
Sbjct: 39 GFAALCRRAGVAPPPPPPLTVFRHFFTAIGCPPGAWYSFRARGSAS 84
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 581 EYDYIIVGGGTSGSVLASRLTEDKPKATVLVIE 679
EYD I+VG G G V A++L A VLV+E
Sbjct: 68 EYDAIVVGSGIGGMVAATQLA--AKGARVLVLE 98
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 530 FLRDSYPLPKGHTTPLEEYDYIIVGGGTSGSVL 628
+L D P P+ +TT EE D + G GTS S L
Sbjct: 1022 YLSDRDPAPRQNTTGREEEDKKVTGIGTSKSNL 1054
>11_06_0718 -
26592786-26593856,26597401-26597451,26597977-26598423,
26599748-26599815,26599965-26600052
Length = 574
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 584 YDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAGK 688
Y+ ++GGGTSG +L L D+ K ++ ++ K
Sbjct: 357 YESQVIGGGTSGKILIPVLYVDEVKKFIVHLKVPK 391
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -2
Query: 696 ISGLPASITNTVALGLSSVRREAKTDPDVPPPTMI*SYSSSGVVCPLGRGYESRKKSKGS 517
+SG+PA T+ + + L A P PP+ + S G V +GRG R+ + G+
Sbjct: 202 LSGMPA--TSFLGMSLCGKPLAACRTPISIPPSQAPALSPEGAVSAVGRGRGGRRLAGGA 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,100,275
Number of Sequences: 37544
Number of extensions: 379894
Number of successful extensions: 965
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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