Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i13
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41) 38 0.006
SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32) 34 0.13
SB_15855| Best HMM Match : BNR (HMM E-Value=1.5) 34 0.13
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0) 33 0.31
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017) 32 0.54
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_54861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27) 28 6.7
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = +2
Query: 572 PLEEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
PL +YD+II GGGT+G +LA+RLT D + VL++EAG
Sbjct: 7 PLGDYDFIIAGGGTAGCILANRLTAD-GRHRVLMLEAG 43
>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +2
Query: 581 EYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAG 685
E+DY+I G G++G VLA+RL+ D P + VL++EAG
Sbjct: 163 EHDYVICGAGSAGCVLANRLSAD-PDSKVLLLEAG 196
>SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)
Length = 264
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 581 EYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAGK 688
+YD IIVGGG +G A + E PK + ++E GK
Sbjct: 4 KYDIIIVGGGAAGFFTAINIAERNPKRKIAILERGK 39
>SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32)
Length = 523
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +2
Query: 572 PLEEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAGK 688
P E YD IVGGG G A L PK T V+E K
Sbjct: 148 PSEHYDVAIVGGGIVGLATARELILRHPKLTFCVLEKEK 186
>SB_15855| Best HMM Match : BNR (HMM E-Value=1.5)
Length = 287
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 608 GTSGSVLASRLTEDKPKATVLVIEAGKPEMLISDIPA 718
G S SV++S+ KAT L++ +G P+ L+SD P+
Sbjct: 74 GASWSVISSKHFRSVQKATALIMASGVPDNLVSDTPS 110
>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
Length = 394
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 575 LEEYDYIIVGGGTSGSVLASRLTEDKPKATVL 670
++ YDY+++GGG+ G A R E KA V+
Sbjct: 48 VKAYDYVVIGGGSGGIASARRAAEFGVKAVVI 79
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 587 DYIIVGGGTSGSVLASRLTEDKPKATVLVIEA 682
D II+G G SG + A+ LTE VLV+EA
Sbjct: 2108 DVIIIGAGVSGLIAANVLTEQDQYIKVLVLEA 2139
>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
Length = 280
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 578 EEYDYIIVGGGTSGSVLASRLTEDKPKATVLVIE 679
+E+D +IVGGG GS A + P V VIE
Sbjct: 101 KEFDVVIVGGGVMGSSSAFHIASRDPTKRVCVIE 134
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 486 RPTTIHPRIHTILSTFYEIRILYLKDIQHHLKSMIIS 596
R I R+HT+L + + +++I+HHLK II+
Sbjct: 226 RGACIPERVHTVLISTQHTPDVGIEEIRHHLKETIIN 262
>SB_54861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 371 KNGVNPTSEG-SKLTERQKRFLLWSYPQSPLVDMIMQTMATNNYS 502
+ G +++G ++E ++ +LW P++P+V + + M N YS
Sbjct: 129 RTGNENSAKGCDNISEYEENGVLWQNPRAPVVSIRLSMMNVNTYS 173
>SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 504 PRIHTILSTFYEIRILYLKDIQHHLKSMIIS*SEEERRGLF*LPALQRTNLRRL 665
PR+ L T+Y + L K+I+ + + S SE+ RR + NL+RL
Sbjct: 70 PRLKAFLKTYYYKKKLTFKEIRRLFRKNVRSLSEKRRRKATRRLKKEIANLKRL 123
>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
Length = 440
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 578 EEYDYIIVGGGTSGSVLASRLTEDKPKATVLVI 676
E YI+VGGGT+ + + P A VL+I
Sbjct: 105 ESVPYILVGGGTASFAAYRAIRKADPTAKVLII 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,347,295
Number of Sequences: 59808
Number of extensions: 434490
Number of successful extensions: 1199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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