Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i13
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    40   2e-05
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.41 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
 Frame = +2

Query: 548 PLPKGHTTPLEE--YDYIIVGGGTSGSVLASRLTEDKPKATVLVIEAGKPEMLISDIPA 718
           P  + H++ + +  YD+I+VGGG + +V+A RL+E      VL++EAG  E   ++IP+
Sbjct: 55  PCQRVHSSRIPDLSYDFIVVGGGAARAVVAGRLSE-VSNWKVLLLEAGPDEPAGAEIPS 112


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 587 DYIIVGGGTSGSV--LASRLTEDKPKATVLVIE 679
           DY++ G GT G++  +  +L E  P   ++ ++
Sbjct: 208 DYLVAGAGTGGTISGIGRKLKELSPNIKIIAVD 240


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 396 SLVGFTPFFLNGSVRFPGKVHKILPFL*FWEGD 298
           SLV   PFF N    F   V   L +  F  GD
Sbjct: 449 SLVASVPFFANADSNFVSDVVTKLRYEVFQPGD 481


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = +2

Query: 275 ENVLEEIESPSQNYRNGKILWTFPGNLTEPFKKNGVNPTSEGSKLTERQKRFLLWSYPQS 454
           EN +  +  P ++   G    +   +       NG++    GS +T    R L   +P +
Sbjct: 50  ENTISSVPQPPRSLE-GSYDSSSGDSPVSSHSSNGIHTGFGGSIITIPPTRKLPPLHPHT 108

Query: 455 PLVDMIMQTMATNN 496
            +V  + QT+ + N
Sbjct: 109 AMVTHLPQTLTSEN 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 396 SLVGFTPFFLNGSVRFPGKVHKILPFL*FWEGD 298
           SLV   PFF N    F   V   L +  F  GD
Sbjct: 417 SLVASVPFFANADSNFVSDVVTKLRYEVFQPGD 449


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 112 LFIILFRSRVPSLLRIVEK 56
           +FIILF SR+ S +R  EK
Sbjct: 234 IFIILFYSRLLSSIRNHEK 252


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 112 LFIILFRSRVPSLLRIVEK 56
           +FIILF SR+ S +R  EK
Sbjct: 234 IFIILFYSRLLSSIRNHEK 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,775
Number of Sequences: 438
Number of extensions: 4581
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)