Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i10
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1348 + 35840197-35841291                                         29   2.2  
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389...    28   5.2  
06_03_0020 + 15515768-15517696                                         28   5.2  
07_03_1045 + 23528768-23528879,23528979-23530399                       28   6.8  
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455...    28   6.8  
02_01_0090 - 637141-640263                                             28   6.8  
12_02_0939 + 24581356-24581628                                         27   9.0  
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392     27   9.0  
08_02_1611 - 28224239-28224511                                         27   9.0  
08_02_0943 + 22849939-22850211                                         27   9.0  
04_01_0495 - 6515982-6516254                                           27   9.0  
03_05_0461 + 24549079-24550464                                         27   9.0  
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    27   9.0  

>02_05_1348 + 35840197-35841291
          Length = 364

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 371 TGRGRHAGASSQCHDRSRKKWIVARHQSRPY--AHRKGC-GICNPRMQG 508
           TGR     ASS       +++++ R  +RPY    RK C  + +P +QG
Sbjct: 254 TGRRAFDAASSDSESEDHQRFLLLRDWARPYLAGDRKRCFALADPALQG 302


>06_03_0157 +
           17337641-17337896,17337975-17338082,17338643-17338908,
           17339933-17340021,17340095-17340198,17340403-17340508,
           17340600-17340675,17340772-17340883,17341719-17342250,
           17343097-17343131,17343924-17343984,17344054-17344132,
           17344266-17344349
          Length = 635

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 144 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQ 290
           +KL+       + +I+P  + L FG + SAF  + +D   F Y QSL +
Sbjct: 232 IKLHSKLERKKMHRIIP--NRLTFGSVRSAFDDIDADDPDFLYIQSLGE 278


>06_03_0020 + 15515768-15517696
          Length = 642

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 369 AQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSL 530
           A G  A PV +   +    + G+  D +++H H         P C  +F S SL
Sbjct: 60  AAGLTADPVAVSRLIKLCVRHGTPSDGRLIHRHVFGGGDVAAPSCSSLFVSNSL 113


>07_03_1045 + 23528768-23528879,23528979-23530399
          Length = 510

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 517 LNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTGVAA 380
           + +S+ S + Y A FS+ +       +  +FP  V AL    GVAA
Sbjct: 382 IGLSIASTLAYVAFFSIGLGPITWVYSSEIFPLQVRALGCSLGVAA 427


>02_05_0869 -
           32344821-32344916,32345255-32345347,32345418-32345551,
           32345863-32346013,32346337-32346407,32346683-32346828,
           32347172-32347221,32347552-32347628,32347716-32347776,
           32347859-32347912,32347999-32348058,32348491-32348624,
           32349740-32350418
          Length = 601

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 424 PTSVMALRRGTGVAAAPCANTVSPDLRHFSNA-SFAVEYSGF 302
           P + M+ +    VAAA  AN  SP L+H S A SFA    G+
Sbjct: 98  PAAAMSPKSIQRVAAAAAANATSP-LQHHSGAPSFATATGGY 138


>02_01_0090 - 637141-640263
          Length = 1040

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +3

Query: 369 AQGAAATPVPLLNAMTEVGKSGSLRDIKVV----HMHTEKDA 482
           A+ AAA P      + EVG  G LR   +V    +MH E DA
Sbjct: 748 AEAAAAAPELTAEVLKEVGLLGRLRHRNIVRLLGYMHNEADA 789


>12_02_0939 + 24581356-24581628
          Length = 90

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 374 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 484
           G GR A A  +  +RSR++W   R   R    R+G G
Sbjct: 19  GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55


>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
          Length = 271

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 324 LRSNIQASCPGAATTIVYT*SNFYPI 247
           +R N   SC G   T++ T  N+YP+
Sbjct: 97  IRCNKDPSCSGNIETVIITDMNYYPV 122


>08_02_1611 - 28224239-28224511
          Length = 90

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 374 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 484
           G GR A A  +  +RSR++W   R   R    R+G G
Sbjct: 19  GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55


>08_02_0943 + 22849939-22850211
          Length = 90

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 374 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 484
           G GR A A  +  +RSR++W   R   R    R+G G
Sbjct: 19  GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55


>04_01_0495 - 6515982-6516254
          Length = 90

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 374 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 484
           G GR A A  +  +RSR++W   R   R    R+G G
Sbjct: 19  GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55


>03_05_0461 + 24549079-24550464
          Length = 461

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -2

Query: 447 CLATIHFFLLRSWH*EEAPAWRPR----PVRTRSA 355
           CL  +  F LR W    AP  RPR    PV  RS+
Sbjct: 281 CLPEVQLFRLRRWRRRAAPRRRPRFVAEPVDARSS 315


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 445 SRNDPLFPTSVMALRRGTGVAAAPC--ANTVSPDLRHFSNASFAVEYSGFLSRGC 287
           S + P    +V A+   T  AAA    A +VS  LRH+    F +  +    +GC
Sbjct: 45  SSSAPTIAAAVPAVAEATAAAAAVSRQAGSVSDALRHYGRCYFELSKARLSFQGC 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,270
Number of Sequences: 37544
Number of extensions: 370392
Number of successful extensions: 1063
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)