Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i10
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19) 68 7e-12
SB_11604| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23) 27 9.2
SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)
Length = 381
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/68 (42%), Positives = 46/68 (67%)
Frame = +3
Query: 357 LTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFM 536
+ VF AAATP+PL+ AM + GK +L++++V+H+H E +A + E + IFR S F+
Sbjct: 2 MKVFVHSAAATPIPLVEAMAKWGKKANLQNVEVIHIHIEGNAEHTKEEYEGIFRDNSFFI 61
Query: 537 AANVRKSV 560
AN RK++
Sbjct: 62 GANCRKAI 69
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 565 EGRSDAIPIFLQDIPKLF 618
+GR+D PIFL +IP +F
Sbjct: 71 DGRADCTPIFLSEIPLVF 88
>SB_11604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 319 PQRRRLRNVLNPG*PCSHRARPP 387
P RRR R + P PC HR R P
Sbjct: 201 PSRRRRRRKVTPSYPCPHRPRSP 223
>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 371 CEHGQPGFKTFLKRLLCGRIFRLPVQGLRQRLCIRKV 261
C G PG +T L++L+C + L +G ++CIR++
Sbjct: 708 CAMGMPGSETALEKLICRVLGDLQAEG---KICIREI 741
>SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -3
Query: 356 PGFKTFLKRLLCGRIFRLPVQGLRQRLCIRKVTSIRFNTKESRT*LPEMKTRDLRNNFRN 177
P F +FLKR+L G+ + L I ++T RFNT R ++K R+ RN R
Sbjct: 374 PSFVSFLKRILHGKSSNDGESRDQAVLVIAQLT--RFNTYVRRREGDDIK-RERRNKSRE 430
Query: 176 HRHPV-I*I*FH--TKQRDVVITI 114
P+ + + H T+ RD+V T+
Sbjct: 431 SSLPIFVGVAVHAKTQSRDLVETL 454
>SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 386 GGRALCEHGQPGFKTFLKRLLCGRIFRLPVQGLRQRLCIRKVTSIRFNTKE 234
GG E G G+ + + + CG+++R G+RQ L + ++ ++K+
Sbjct: 20 GGNGSEEEGDIGYHSIGRNIKCGKLYRCDNSGIRQ-LYVSRICKYYTDSKQ 69
>SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 402 EEAPAWRPRPVRTRSARI*DISQTPPLRSNIQASCPGAATTI 277
+ +PA RPRP R+++ +I S T L + S PG+ T+
Sbjct: 94 QPSPAKRPRPSRSKANKINPASTTAGL-IRVPGSLPGSIATV 134
>SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 402 EEAPAWRPRPVRTRSARI*DISQTPPLRSNIQASCPGAATTI 277
+ +PA RPRP R+++ +I S T L + S PG+ T+
Sbjct: 94 QPSPAKRPRPSRSKANKINPASTTAGL-IRVPGSLPGSIATV 134
>SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)
Length = 235
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 228 NLTSRNEDSRLEEQFS*SQTSCYLNLVSHKA 136
+L ++E+ +EE+ QT C++N SH+A
Sbjct: 69 DLQPQDEEEVIEEKLDDLQTQCHINTGSHEA 99
>SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 174 QTSCYLNLVSHKAKGCRYYYF 112
Q C+ N+V+ + KGCR Y+
Sbjct: 40 QFKCFRNIVNRERKGCRVKYY 60
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 371 CEHGQPGFKTFLKRLLCGRIFRLPVQGLRQRLC--IRKVTSIRFNTK 237
C G PG +T L+ L+C + L +G+ C + K + R +TK
Sbjct: 404 CAMGMPGSETALEELMCRVLGDLLAEGVVVNFCSLVSKKKNCRTSTK 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,892,351
Number of Sequences: 59808
Number of extensions: 428545
Number of successful extensions: 1177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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