Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i10
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...    57   9e-09
AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   6.1  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   6.1  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    27   8.1  

>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 32/87 (36%), Positives = 47/87 (54%)
 Frame = +3

Query: 300 RKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKD 479
           + P+  +  EA  + +KSG  VF  G AATP PLL +++E   + +L  IK+ H+H E  
Sbjct: 36  KSPKVVSLAEA-TRDIKSGDNVFVHGIAATPTPLLQSLSEHAVANNLNKIKLHHLHLEGA 94

Query: 480 AAYVTPECKDIFRSVSLFMAANVRKSV 560
             +     +D  RS SLF   N+R  V
Sbjct: 95  TPWTAEGVRDRIRSNSLFTGHNLRACV 121


>AF039045-2|AAO38660.2|  217|Caenorhabditis elegans Hypothetical
           protein F15E11.15a protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 460 WTTLMSRNDP-LFPTSVMALRRGTGVAAAPCA 368
           W+T + +  P LF +++ ALRR T   +APCA
Sbjct: 24  WSTCIRKTSPVLFSSTIFALRRMT-APSAPCA 54


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 144 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 293
           + ++   RM+  T I P+ +  +  + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 144 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 293
           + ++   RM+  T I P+ +  +  + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 282  LSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVH 461
            + +P DR   ++ + E  E      L    + A A+PVP  ++   V ++ +   +   H
Sbjct: 4037 VQEPEDRPENFAESHEKTEATSDENLFESDKYAPASPVPSEDSSNRVIETTTTTTVTREH 4096

Query: 462  MHTEKDAAYV 491
               E D +YV
Sbjct: 4097 FEPEDDHSYV 4106


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 282  LSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVH 461
            + +P DR   ++ + E  E      L    + A A+PVP  ++   V ++ +   +   H
Sbjct: 4037 VQEPEDRPENFAESHEKTEATSDENLFESDKYAPASPVPSEDSSNRVIETTTTTTVTREH 4096

Query: 462  MHTEKDAAYV 491
               E D +YV
Sbjct: 4097 FEPEDDHSYV 4106


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 387 WRPRPVRTRSARI*DISQTPPLRSNIQAS-CPGA 289
           W PRP R   + + D   T P R  I+A+  PGA
Sbjct: 127 WTPRPTRKDFSDVDDYEITQPARETIEATEKPGA 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,835
Number of Sequences: 27780
Number of extensions: 304137
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)