Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i09
(423 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29280.1 68417.m04186 expressed protein ; expression supporte... 29 1.3
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 29 1.7
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein... 28 2.3
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 28 3.0
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 27 5.2
At3g10100.1 68416.m01210 filament protein-related similar to YEA... 27 5.2
At2g09910.1 68415.m01029 hypothetical protein 27 5.2
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro... 27 6.9
At4g20730.1 68417.m03013 filament protein-related similar to Cyt... 27 6.9
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,... 27 6.9
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 27 6.9
At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family... 26 9.1
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 26 9.1
At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containi... 26 9.1
At2g07680.1 68415.m00992 ABC transporter family protein 26 9.1
At1g67290.1 68414.m07658 glyoxal oxidase-related contains simila... 26 9.1
>At4g29280.1 68417.m04186 expressed protein ; expression supported
by MPSS
Length = 77
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 180 CMCEVYPGGVCNPSFCVCV*YRLKNGAG 97
C ++PG C+PS CV Y NG G
Sbjct: 31 CTIIIHPGSPCDPSDCVQYCYAEYNGVG 58
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 267 TVGCVECLAVNSSVFCNFGGLSMNGSWIFC 178
T+ C C + ++V C+ GG S NGS ++C
Sbjct: 784 TITC-SCGRITATVPCDAGGRSANGSNVYC 812
>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 604
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 400 IYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRA 296
++L+ S LF LSLK +HDFV V++ T++
Sbjct: 21 LFLKTSQS--LFPRPSLSLKPMKHDFVCVKATTKS 53
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 94 HAGAVLQPVSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINS 243
HAG L PV+ A+++AR A ++D E A A+ T+ + S
Sbjct: 229 HAGEYLDPVAVAESKARRRRAKKMDSIEDEKAKASEGGKAKNTQQTDVGS 278
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 385 SNKNKLFELSGLSLKSCRHDFVTVESQTRAG 293
S+K + F LS +SLK H+F T ES + AG
Sbjct: 223 SSKKRSF-LSRVSLKRNGHEFSTAESSSAAG 252
>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
NUF1 protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; similar to
Myosin heavy chain, smooth muscle isoform (SMMHC)
(SP:P35749) {Homo sapiens}
Length = 1004
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 62 SFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
++F +CH+WF P+ S + + TP
Sbjct: 168 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 199
>At2g09910.1 68415.m01029 hypothetical protein
Length = 985
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 62 SFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
++F +CH+WF P+ S + + TP
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 200
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
protein similar to meiotic asynaptic mutant 1
[Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
oleracea var. alboglabra] GI:23506946; contains Pfam
profile PF02301: HORMA domain
Length = 1399
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 62 SFFNRCHIWFDTPA---PFFSRYHTQTQKL 142
++F +CH+WF P+ F +R H +L
Sbjct: 760 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 789
>At4g20730.1 68417.m03013 filament protein-related similar to
Cytadherence high molecular weight protein 2 (SP:P47460)
[Mycoplasma genitalium]; similar to YEAST NUF1
protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; also
SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
filament protein SP|P12882|MYH1_HUMAN Myosin heavy
chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
cell intermediate filament protein
Length = 800
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 62 SFFNRCHIWFDTPA---PFFSRYHTQTQKL 142
++F +CH+WF P+ F +R H +L
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 198
>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 659
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 11 TTAT*ITQFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 157
TT T T SS SS R + +P+P SR T + ++TP
Sbjct: 55 TTTTTTTTTSSSSSSSSSAILRTSKRYPSPSPLLSRSTTNSASNSIKTP 103
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 194 PFIDKPPKLQNTLLLTARHSTHPTV 268
P +DKP ++ + LLT+RH H V
Sbjct: 704 PVVDKPAPVRISSLLTSRHLLHRRV 728
>At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family
protein Common family member At4g25620 [Arabidopsis
thaliana]
Length = 438
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 95 TPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHST 256
TP P FS + T+ PP + HI P + L ++L LT R ST
Sbjct: 142 TP-PVFSAFITEPSTAPYTPPPESSVHITTPSSPEVPFAQLLTSSLELTRRDST 194
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 271 EGTKRFRRLPSFGFRLLQNRVCKILN 348
E RF LP++GFR LQ+ + + N
Sbjct: 882 EAKVRFTLLPTWGFRELQHEIARRFN 907
>At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 822
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -1
Query: 306 KRGQATKSLRSFATVGCVECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGVCNPS 139
K +A K S GCV ++V G S + I +C++ G C+P+
Sbjct: 401 KEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG-CSPN 455
>At2g07680.1 68415.m00992 ABC transporter family protein
Length = 1194
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 302 EGRRRNRFVPSLLSDVWNVWLLIVACSVTSA 210
+G R+ P LS+ W +W ++ C V +A
Sbjct: 1046 QGSLRDNLDPLGLSEDWRIWEILDKCKVKAA 1076
>At1g67290.1 68414.m07658 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 615
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -1
Query: 261 GCVECLAVNSSVFCNFGGLSMNGSWI 184
G ++ LA+ + +C+ GGL++NG+ +
Sbjct: 166 GDIKPLALTTDTWCSSGGLTVNGTLV 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,954
Number of Sequences: 28952
Number of extensions: 157197
Number of successful extensions: 396
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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