Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i08
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.30
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 0.69
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.91
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 1.2
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 1.6
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 2.1
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 2.8
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 2.8
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.8
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 3.7
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 6.4
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 24 8.5
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.30
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 224 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 343
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 0.69
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 185 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 331
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 0.91
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -1
Query: 207 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 34
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 33 KLVTSGW 13
+ T+GW
Sbjct: 237 TVNTNGW 243
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +2
Query: 2 HNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREFDT 181
H F ++ + N +E N + P+L T+ L +D P ++++ + +T
Sbjct: 1383 HQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENT 1440
Query: 182 EALVNF 199
++NF
Sbjct: 1441 PLILNF 1446
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 85 GNACVISFSDHKLHFVSKISNK 20
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 302 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 403
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +2
Query: 167 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 328
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 329 ITEVE 343
+ E E
Sbjct: 65 LNESE 69
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 2.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 88 SGNACVISFSDHKLHFVSKISNKW 17
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 231 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 115
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 3.7
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +2
Query: 191 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 352
++ E++ +V G++KRK N ++ E+N++P D+ LSD + +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185
Query: 353 YLTLLLI-VEHAYLHYY 400
L L+ + ++H ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 227 AKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITE 337
+ T+ A R +D++ KQP Y + SDF IT+
Sbjct: 398 SSTYKADDDSIYHRKEDFK--KQPSYPVLTSDFEITD 432
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +2
Query: 50 FVVTETNDTSIPGEPILFTENEGVLL----CSVDRPSI 151
FV+ +T TSI G P++ G++L S+D P +
Sbjct: 272 FVINDTGLTSIDGFPVISEIGGGLVLLGNFSSIDMPDL 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,838
Number of Sequences: 5004
Number of extensions: 27050
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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