Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i08
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 3.6
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 4.7
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 27 4.7
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 27 6.2
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620... 27 6.2
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 27 8.2
05_05_0218 - 23367998-23368441 27 8.2
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 27 8.2
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 179 TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 343
TE N + + N I+K +K+TTR DD + Q M+LS+ T E
Sbjct: 525 TEDDANLASSSKNTMISKHHNTVDQKSTTRKDDSRNRSQK--IMELSEVRGTNTE 577
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.5 bits (58), Expect = 4.7
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -3
Query: 256 FALRGAKRLGYPHVAVIVFKVY*SLGVKLAA*HFNDRRSVDGAQQHPLVFCKQNGFSGNA 77
F +RG K PH V+ F + L A H N+RR V G + L + NA
Sbjct: 700 FMIRGKKNFLPPHPLVMGFGILFRLDESSLASHLNERR-VRGEDEEALPDVESQKLESNA 758
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 2 HNRFHPLVTNFTNKMEFVVTETNDTSIPG 88
H FH + + TNK+E V++ T + I G
Sbjct: 427 HRLFHHPIDDCTNKIEHVISRTEQSFISG 455
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 284 SNKQPDYDMDLSDF 325
SN+ P +DMDLSDF
Sbjct: 566 SNRAPTFDMDLSDF 579
>01_06_1254 +
35761046-35761162,35761332-35761416,35761877-35762017,
35762118-35762206,35762519-35762701,35763509-35763697,
35763808-35763938,35764023-35764125,35765123-35765308
Length = 407
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +2
Query: 134 VDRPSIVKMLSREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMD 313
VD + R+ ++EA N E N N + S K SDD + N D D+D
Sbjct: 325 VDDAEAYDVYERQEESEA--NEEPSNKNQDEGPSSSTSNGKEVEESDDEDINIDDDLDID 382
Query: 314 LSDFSITEVEATQYLTLLLIVE 379
+ E+EA+ T + I E
Sbjct: 383 ----ELNELEASLSRTSIQIRE 400
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -1
Query: 264 VVFLRLEAPNVLAIRTLQLSFSKFTKASVSNSRLSILTID 145
++ R E +VLA++ L FSK T ++ ++ +++T++
Sbjct: 1162 LIIYRAEEADVLALKETLLQFSKATGLQINFAKSTMITLN 1201
>05_05_0218 - 23367998-23368441
Length = 147
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = -3
Query: 118 PLVFCKQNGFSGNACVISFSDHKLHFVSKISNKWMESI 5
P+ ++ G G+ C + +LH V + +W+E++
Sbjct: 68 PVAPPQRGGAEGDGCTAPWRSCRLHVVEAVFLRWLEAV 105
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 189 KASVSNSRLSILTIDGLSTEHNSTPS 112
KA S + IL + GLS E STPS
Sbjct: 577 KAFSQTSYIRILDLSGLSNEEQSTPS 602
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,598,764
Number of Sequences: 37544
Number of extensions: 167945
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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