Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i08
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 2.8
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 28 2.8
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 3.7
SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1) 27 4.8
SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_11940| Best HMM Match : TspO_MBR (HMM E-Value=6.8) 27 6.4
SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 32.7 bits (71), Expect = 0.13
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = -1
Query: 225 IRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTN 49
+ L S +F + +NS LT++ L + + T + S +G ++VS+ SVTTN
Sbjct: 737 VTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTN 796
Query: 48 SILLVKLV 25
S++LV ++
Sbjct: 797 SLILVVII 804
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 93 GSPGMLVSLVSVTTNSILLVKLV 25
G ++VS+ ++TTNS+LLV ++
Sbjct: 413 GIVSIIVSITAITTNSLLLVVII 435
>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1101
Score = 31.5 bits (68), Expect = 0.30
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 164 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQP 298
S E + +ALV +DN N +IAK G+S+ +T +Y K P
Sbjct: 183 SVEREIQALVGKSDDNTNKKIAKMDGSSQIPDTLLPSEYHIVKNP 227
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -2
Query: 395 NANRHVRRSATELDIEWLQ-PQLC*NRSNPYR--NLVVYLTRNHRCASCFCA*RRQTSWL 225
N H+ R A ++ + P C R Y+ N +++ ++N +C CA + +W
Sbjct: 1305 NCEHHLTRLALKIHRDRKSHPLNCYYRGRMYQTGNKIIHRSKNGKCYRAICAGGKIANWR 1364
Query: 224 SARC 213
SA C
Sbjct: 1365 SAVC 1368
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 59 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 166
+E D SI P + N G L+C VDR SI ++ S
Sbjct: 37 SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 28.3 bits (60), Expect = 2.8
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -1
Query: 225 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTT 52
I +++LS S T +S++ ++LS L+ LST STPS S P + V
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPS---TTWKVFR 239
Query: 51 NSILLVKLVTSG 16
+LL + V G
Sbjct: 240 TKVLLERSVKEG 251
>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 939
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 239 GASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIV 376
G SKRK+ TR ++ N + DY + S + +E L ++L +
Sbjct: 18 GGSKRKHHTRLKEHTLNSKQDYKLCNSSLVMKSLEWRTVLFIVLCI 63
>SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)
Length = 476
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 174 NSRLSILTIDGLS-TEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILL 37
NS+ + D S T H + PS+ V+ G GM V + + TT S +L
Sbjct: 113 NSKPTQQVCDSFSLTPHTTLPSYVVSHAGLAGMRVRIPNCTTWSEIL 159
>SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 260 TTRSDDYESNKQPDYDMDLSDFSITEVEAT 349
TT++ S KQP YD ++F+I E T
Sbjct: 22 TTKAGGTNSRKQPAYDTSRTEFNIDEGNVT 51
>SB_11940| Best HMM Match : TspO_MBR (HMM E-Value=6.8)
Length = 229
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 275 DYESNKQPDY-DMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNXXK 421
DY++ PD D DLS+ + + T LT++L L YYI + K
Sbjct: 144 DYKALVPPDVLDHDLSNRHLNVMSGTVALTVVLFSGSVGLFYYIVHSEPK 193
>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 257 NTTRSDDYESNKQPDYDMDLSDFS 328
N +DDY QPDYD L D +
Sbjct: 704 NNGLNDDYLPGVQPDYDQALEDIT 727
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,462,334
Number of Sequences: 59808
Number of extensions: 212301
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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