Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i08
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    28   0.038
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.61 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   5.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   10.0 

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 0.038
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 150 IDGLSTEHNST-PSFSVNKMGSPGMLVSLVSVTTN 49
           +D +  EH +T P ++V ++  PG+ ++ + +TTN
Sbjct: 408 VDDVFQEHKNTLPQYTVQQLDFPGIEIADIKLTTN 442


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 293 QPDYDMDLSDFSITEVEATQYLTLLLIVE 379
           QP    D+SD+    +     LT+ LIVE
Sbjct: 363 QPSEGEDISDYKFRHITEITILTVQLIVE 391


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 203 FQSLLKPRCQTRGLAF 156
           F+ L++ +C+ RG+ F
Sbjct: 762 FKDLVQKKCEERGILF 777


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 23  VTNFTNKMEFVVTETNDTSIPGEPILF 103
           +  +T K+EFVV +      P  P +F
Sbjct: 395 INPWTKKLEFVVGQHRILKGPANPDIF 421


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 23  VTNFTNKMEFVVTETNDTSIPGEPILF 103
           +  +T K+EFVV +      P  P +F
Sbjct: 101 INPWTKKLEFVVGQHRILKGPANPDIF 127


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
          esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 45 ILLVKLVTSGWNL 7
          +LL  LVT GW L
Sbjct: 7  VLLSSLVTFGWTL 19


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 45 ILLVKLVTSGWNL 7
          +LL  LVT GW L
Sbjct: 7  VLLSSLVTFGWTL 19


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 132 PSTDRLSLKC*AASLTP 182
           PST+ L+ KC     TP
Sbjct: 346 PSTETLNTKCNTLERTP 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,886
Number of Sequences: 438
Number of extensions: 1794
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)