Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i07
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   151   7e-38
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.88 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   4.7  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   8.2  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  151 bits (366), Expect = 7e-38
 Identities = 75/133 (56%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +1

Query: 67  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 246
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 247 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP 426
           KVRAGRGFTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 427 -KGKKVLKGEANE 462
            K  +  KG+A +
Sbjct: 128 RKAGQPKKGDATD 140



 Score = 29.1 bits (62), Expect = 0.50
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 LMPVQQPAPKSVARPITEDEKNFKAYQYL 586
           ++P+ Q A +  A+PITE+ KNF A+  L
Sbjct: 152 VLPITQEAVEE-AKPITEEAKNFNAFSTL 179


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 279  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 160
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 395 RNTERVLYCSRKAKRC*RVRPMKKERKLATQLRGPLMPVQQPAPKSVA 538
           + TE+V   S+K  +    + +KK+RKL  ++R     +++ A K+VA
Sbjct: 400 QKTEKVSQ-SKKGAKVKEEKGLKKDRKLPKKMRKAQKKLERKAGKAVA 446


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 260 VEDSLFVKLGPQD*TQYLPERLELL 334
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 71  LMDISTRIGKDLLKLGLTSQLDDTAES 151
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,788
Number of Sequences: 5004
Number of extensions: 51485
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)