Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i07
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 171 4e-43
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 28 4.9
SB_49597| Best HMM Match : Gal_Lectin (HMM E-Value=9e-23) 28 4.9
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3) 28 6.5
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4) 28 6.5
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7) 27 8.6
SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1) 27 8.6
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 171 bits (416), Expect = 4e-43
Identities = 81/136 (59%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+ R LRPIVRCPT
Sbjct: 4 KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
+Y+TKVRAGRGFTL E++AAG+ A TIGIAVD RR+N+S ESLQ NVQR+KEY+++
Sbjct: 64 FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123
Query: 412 LILFP-KGKKVLKGEA 456
LI+FP K K +G++
Sbjct: 124 LIVFPRKANKPKQGDS 139
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 479 ATQLRGPLMPVQQPAPKSVARPITEDEK 562
A QL+GP+MP+ Q + ARPITEDEK
Sbjct: 147 AVQLQGPVMPIPQESVPIKARPITEDEK 174
>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 177 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIPLAHFDVGVLPRQRK 13
G F +IL+ A SS L++P F+ SLP+ + + L H P +RK
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH-SCSAFPLERK 248
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V ++T NP L++R N +P R +L+W++ G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418
>SB_49597| Best HMM Match : Gal_Lectin (HMM E-Value=9e-23)
Length = 122
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 337 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEERT*AG 480
D RRRN + + +V R+ E R + PKGK ++ AN RT G
Sbjct: 17 DDRRRNPNTCLGRPSVFRLCENRQGTLRCPKGKVIVVAYANYGRTAKG 64
>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
Length = 449
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226
>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
Length = 318
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 66 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116
>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
Length = 154
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS A V +T NP L++R N +P R +L+W++ +
Sbjct: 60 KGSWAALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEK 103
>SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)
Length = 165
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V ++T NP L++R N +P R L+W++ G +
Sbjct: 110 KGSWVALTVESSTLANPNILLARIQNLMPGRKALLLWFKATGKK 153
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 27.5 bits (58), Expect = 8.6
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Frame = -1
Query: 528 LGAGC*TGI-NGPRSCVASLRSFFIGLTLQHLFAFREQYKTRSVFLYSLNIDLQ*FNRLV 352
+G TGI N RS V S+ +GL+ +L F L + + F RL
Sbjct: 978 MGCSSSTGIRNDGRSVVPSVFYCLVGLSRPYLPEFANDRSVVPSVLDCFVVGAKVFPRLP 1037
Query: 351 ASTGIYSNSNRSGKYWVQSC---GPN-FTKSESSTG 256
+STGI N RS V C G F + SSTG
Sbjct: 1038 SSTGI-RNDGRSVVPSVLDCLLVGARVFPRLPSSTG 1072
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,166,173
Number of Sequences: 59808
Number of extensions: 369002
Number of successful extensions: 1057
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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