Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i07
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   152   2e-37
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    94   6e-20
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    28   4.3  
U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permeas...    27   7.5  
AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion transpo...    27   7.5  
AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion transpo...    27   7.5  
AC024790-15|AAK84608.3|  191|Caenorhabditis elegans Hypothetical...    27   7.5  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  152 bits (369), Expect = 2e-37
 Identities = 71/139 (51%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
 Frame = +1

Query: 52  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
            RY+TK R GRGF+L+E++AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123

Query: 412 LILFP-KGKKVLKGEANEE 465
           LILFP K     KG+++ E
Sbjct: 124 LILFPKKASAPKKGDSSAE 142


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +1

Query: 52  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 232 VRYHTKVRAGRGFTLREIRAAGLN 303
            RY+TK R GRGF+L+E++AA  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -2

Query: 188 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 99
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 415 ILFPK-GKKVLKGEANEERT*AGYTATWSI 501
           I F K GKK  +G  N ++T AGY A W I
Sbjct: 830 ISFEKDGKKASRGFLNLKKTEAGYVAKWHI 859


>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
           protein T04A11.3 protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 415 ILFPK-GKKVLKGEANEERT*AGYTATWSI 501
           I F K GKK  +G  N ++T AGY A W I
Sbjct: 636 ISFEKDGKKASRGFLNLKKTEAGYVAKWHI 665


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 415 ILFPK-GKKVLKGEANEERT*AGYTATWSI 501
           I F K GKK  +G  N ++T AGY A W I
Sbjct: 830 ISFEKDGKKASRGFLNLKKTEAGYVAKWHI 859


>U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permease
           family protein 3 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 509 LALMDHVAV*PAYVLSSLASPFSTFLPFGNSIRRALYSFIL*TLICNDSTDLLRLRGSTA 330
           +AL     V P Y L +   P   ++ FG S   AL  F + +L+ + + + + LR +T+
Sbjct: 79  IALASITGVPPVYGLYTAIFPSFLYIFFGTSKHNALGGFAVLSLMTHGAIEKVMLRTATS 138


>AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion
           transporter SULP-3b protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 509 LALMDHVAV*PAYVLSSLASPFSTFLPFGNSIRRALYSFIL*TLICNDSTDLLRLRGSTA 330
           +AL     V P Y L +   P   ++ FG S   AL  F + +L+ + + + + LR +T+
Sbjct: 79  IALASITGVPPVYGLYTAIFPSFLYIFFGTSKHNALGGFAVLSLMTHGAIEKVMLRTATS 138


>AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion
           transporter SULP-3a protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 509 LALMDHVAV*PAYVLSSLASPFSTFLPFGNSIRRALYSFIL*TLICNDSTDLLRLRGSTA 330
           +AL     V P Y L +   P   ++ FG S   AL  F + +L+ + + + + LR +T+
Sbjct: 79  IALASITGVPPVYGLYTAIFPSFLYIFFGTSKHNALGGFAVLSLMTHGAIEKVMLRTATS 138


>AC024790-15|AAK84608.3|  191|Caenorhabditis elegans Hypothetical
           protein Y47D7A.14 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 476 AYVLSSLASPFSTFLPFGNSIR 411
           A  LS++ SP S+FLPF  S+R
Sbjct: 59  AVTLSNVVSPLSSFLPFFISVR 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,749
Number of Sequences: 27780
Number of extensions: 283273
Number of successful extensions: 717
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)