Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i07
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 151 3e-37
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 151 3e-37
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 146 1e-35
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 137 4e-33
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.33
At1g73990.1 68414.m08569 peptidase U7 family protein similar to ... 30 1.3
At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A... 29 1.7
At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A... 29 1.7
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 29 1.7
At1g62250.2 68414.m07023 expressed protein 29 2.3
At1g62250.1 68414.m07022 expressed protein 29 2.3
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 3.0
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 3.0
At5g64410.1 68418.m08091 oligopeptide transporter OPT family pro... 27 7.0
At5g12280.1 68418.m01444 hypothetical protein 27 7.0
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 9.3
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 9.3
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 27 9.3
At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)... 27 9.3
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 151 bits (367), Expect = 3e-37
Identities = 71/139 (51%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 412 LILFP-KGKKVLKGEANEE 465
L++FP + +KV G++ E
Sbjct: 122 LVIFPRRARKVKAGDSTPE 140
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +2
Query: 401 TERVLYCSRKAKRC*RVRPMKKERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAY 577
T+ V++ R+A++ +E ATQ++G +P+ + P +T + K+FKA+
Sbjct: 120 TKLVIF-PRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAF 177
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 151 bits (367), Expect = 3e-37
Identities = 71/139 (51%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 412 LILFP-KGKKVLKGEANEE 465
L++FP + +KV G++ E
Sbjct: 122 LVIFPRRARKVKAGDSTPE 140
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +2
Query: 401 TERVLYCSRKAKRC*RVRPMKKERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAY 577
T+ V++ R+A++ +E ATQ++G +P+ + P +T + K+FKA+
Sbjct: 120 TKLVIF-PRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAF 177
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 146 bits (353), Expect = 1e-35
Identities = 68/139 (48%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
++Y+ KVRAG+GFTL E++ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 412 LILFP-KGKKVLKGEANEE 465
L++FP + ++V G++ E
Sbjct: 122 LVVFPRRSRQVKAGDSTPE 140
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 137 bits (332), Expect = 4e-33
Identities = 63/132 (47%), Positives = 88/132 (66%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RP+V T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
+ Y+ KVRAG+GFTL E++AAG+ A TIGI+VD R+N+S+E Q NVQR+K Y+A+
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121
Query: 412 LILFPKGKKVLK 447
L++FP+ + +K
Sbjct: 122 LVIFPRCARTVK 133
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 320 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 186
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At1g73990.1 68414.m08569 peptidase U7 family protein similar to
protease IV GB:AAA57008 from [Escherichia coli];
contains Pfam profile PF01343: Peptidase family U7
Length = 677
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = -1
Query: 483 VASLRSFFIGLTLQHLFAFREQYKTRSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGKYW 304
+ L+ +++G LFA Y FLY L + + GI R GKY
Sbjct: 206 ICGLKEYYLGCACNELFAPPSAYS----FLYGLTVQASFLGGVFEKVGIEPQVQRIGKY- 260
Query: 303 VQSCGPNFTKSESSTGAY 250
+S G ++ S Y
Sbjct: 261 -KSAGDQLSRKSISEENY 277
>At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 352 NKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEERT*AGYTATWSI 501
N++V+SL +NV+++ +++ K + EANE A ATW +
Sbjct: 439 NQAVQSLTLNVRKVMAETDQILFDECLAKFQEDEANETEVVAKREATWKL 488
>At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 352 NKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEERT*AGYTATWSI 501
N++V+SL +NV+++ +++ K + EANE A ATW +
Sbjct: 439 NQAVQSLTLNVRKVMAETDQILFDECLAKFQEDEANETEVVAKREATWKL 488
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 182 ATALAFFILFCFLRYRRAGWLNQV 111
A L FFI FCF YR +G+L V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 235 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 402
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 235 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 402
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 340 DLQQFQSFGQILGSILRP 287
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 340 DLQQFQSFGQILGSILRP 287
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At5g64410.1 68418.m08091 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 729
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -1
Query: 201 PSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPILV-EMSIRYHIIPLAHFDVGVLP 25
P+ W++ + FL L+S S+L + ++ P+++ +++++ +P+ HF VLP
Sbjct: 28 PTLPVWTFRMWFLG--LISCSLLSFLNQFFSYRTEPLVITQITVQVATLPIGHFLAKVLP 85
Query: 24 RQR 16
+ R
Sbjct: 86 KTR 88
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 358 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 456
+V+SL NV +KE + I FP K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 312 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 133
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 624 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 682
Query: 132 SWLVKPSFNKSLPILV 85
+K N LP+ V
Sbjct: 683 DGRIKLFHNYGLPVPV 698
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 312 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 133
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 620 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 678
Query: 132 SWLVKPSFNKSLPILV 85
+K N LP+ V
Sbjct: 679 DGRIKLFHNYGLPVPV 694
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 271 TLREIRAAGLNPVFARTIGIAVDPR 345
T E+RA G+ VFA I + DPR
Sbjct: 158 TALEVRATGIQYVFAPCIAVCRDPR 182
>At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 349
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 339 IYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASH 217
+ ++R+G VQ P+FT+SE+STG S+ +W +
Sbjct: 54 VSQGTHRAGPNLVQKV-PSFTESETSTGDRSSVDGYNWRKY 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,182
Number of Sequences: 28952
Number of extensions: 267349
Number of successful extensions: 643
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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