Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i06
         (109 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   3.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   5.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   9.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              18   9.8  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              18   9.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 108 FFFGSKHSYL 79
           +F+  KHSYL
Sbjct: 91  YFYNGKHSYL 100



 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 107 FFLVVNIRIYNIMLSFYLQINTNSVN 30
           FFL +N+  +   LS   +IN  +VN
Sbjct: 434 FFLAINVFYWFAYLSRSERINYYNVN 459


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 107 FFLVVNIRIYNIMLSFYLQINTNSVNK*MVNYLH 6
           FFL+  + I  + +   L+I ++S+ + +  Y+H
Sbjct: 213 FFLIPMVFIAVLYIRIGLRIQSDSLAENVEGYVH 246


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 108 FFFGSKHSYL 79
           +F+  KHSY+
Sbjct: 123 YFYNGKHSYV 132


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 20  PFIY*LNLYLFVNKTTT 70
           P +  LN YL  N+T T
Sbjct: 229 PSLTSLNAYLIKNQTIT 245


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 20  PFIY*LNLYLFVNKTTT 70
           P +  LN YL  N+T T
Sbjct: 229 PSLTSLNAYLIKNQTIT 245


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 20  PFIY*LNLYLFVNKTTT 70
           P +  LN YL  N+T T
Sbjct: 280 PSLTSLNAYLIKNQTIT 296


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 20  PFIY*LNLYLFVNKTTT 70
           P +  LN YL  N+T T
Sbjct: 229 PSLTSLNAYLIKNQTIT 245


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 38  NLYLFVNKTTTLYYKYECL 94
           N+Y+  NK    + KY+ +
Sbjct: 111 NIYIRFNKLVKCFGKYKTM 129


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 38  NLYLFVNKTTTLYYKYECL 94
           N+Y+  NK    + KY+ +
Sbjct: 111 NIYIRFNKLVKCFGKYKTM 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,432
Number of Sequences: 438
Number of extensions: 305
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)