Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i03
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   3.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   3.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   4.3  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   5.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.9  

>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 187 VNKPIFNSYISAQFN*LYTNAY*SLLQRVLVYKQIALNI 71
           V +P       AQF+   TN   SLL  + +Y+Q+A N+
Sbjct: 12  VQRPSAGPVNQAQFSQQRTNQLTSLLHTMTMYQQLAQNV 50


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 155 TNIRIKNGFVYVLHKIHKVIDRHKSEVSLCCVV 253
           T I   +GF Y+L  +H+++D+ +S+ S C +V
Sbjct: 707 TEISGSSGFQYILFILHQLLDK-ESDDSACFLV 738


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 146 ELCTNIRIKNGFVYV-LHKIHKVIDRHKSEVSLCCVV 253
           ++CT + +   F +  +HK+ K++DR    +  C ++
Sbjct: 16  DVCTCLLVDKVFYWSQIHKVRKLVDRSIERMESCSII 52


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 384 TLWTAFKTTEAHEVVYEMKLFQA 452
           +L T   TTE HE  Y  KL +A
Sbjct: 383 SLTTGLSTTEGHETGYSRKLHEA 405


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 179 FVYVLHKIHKVIDRHKSEVSLCC 247
           ++  L K+HKV+  H S V++ C
Sbjct: 36  YISFLTKLHKVLQTHSSFVNIPC 58


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 297 GYMATFNEFEYLQYWFLLSFLMSVALNAPTLW 392
           GY   +   EY    F LS   S + NAPT W
Sbjct: 207 GYKMKYKHPEYHYTDFQLSNGSSYSCNAPTFW 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,481
Number of Sequences: 5004
Number of extensions: 48395
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)