Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i03
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    27   9.1  

>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 100 LVYKQIALNILCDKLYVYRAWELVFEFSDAL 8
           +VY    +N++ D ++VY   ++  E+SDAL
Sbjct: 380 IVYNVALINLVMDMIFVYSRRQIDLEYSDAL 410


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 261 NVTLCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMK 440
           NV +      ++ +M     + Y+ YW   +F   VA+    L T F+T EA   V + +
Sbjct: 344 NVVMWLLVVCIIMFMIIMLLYVYI-YWLRSTF---VAIEERALPTEFET-EASLFVAKQR 398

Query: 441 LFQAMYFSNVLLNYVV 488
            FQ+ Y+   LL+  V
Sbjct: 399 SFQSAYYDPALLDVSV 414


>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 305 HVSHQHGRVGAQR-HVNVRQRSIGKLHFCVGR 213
           HVSH HGR+G  R H   R  + G+ H  + R
Sbjct: 14  HVSHGHGRIGKHRKHPGGRGNAGGQHHHRINR 45


>AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical
           protein Y119C1B.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 207 RLSTDTKVKFPYAALSYINVTLCTYTAMLVGYMATF------NEFEYLQYW 341
           R+ T+T + +    L+   V L  + A+++GY+  F      N+ + L YW
Sbjct: 88  RIRTETDINYTVFNLALTIVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYW 138


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 225 LCRSIT-LCI--LCNT*TNPFLILILVHNSIDYIQMLTKVY 112
           +CR++  LCI  LC   T  FL LI +H+ +  ++   KVY
Sbjct: 21  ICRNVKILCIKILCKFITWDFLYLIKLHDELVKLKFSPKVY 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,126,626
Number of Sequences: 27780
Number of extensions: 277886
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)