Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i02
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.019
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 33 0.044
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 33 0.044
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.13
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.23
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 30 0.31
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 0.41
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.54
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 29 0.71
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 28 1.2
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 2.2
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 2.2
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 2.2
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 2.2
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 2.9
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 3.8
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 5.0
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 5.0
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 5.0
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 6.6
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 6.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 6.6
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 8.8
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 8.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 8.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.8
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
FS DGKY T T+D ++K+WD T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 32.7 bits (71), Expect = 0.044
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 18 NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEY 128
N+ F DGK+ +T ++DG +K+WD +++ Y
Sbjct: 85 NVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 32.7 bits (71), Expect = 0.044
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 258 IVLGTTNGKLLIYSISQAKIINVWVPAKHFS-AKVTALDWSRKYGLYSCTKDSRVYEWNI 434
++ G NG +++YS + V KH + AL S K L S + D VY W++
Sbjct: 203 VLSGVNNGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL-SGSWDKMVYYWDL 261
Query: 435 EDGSVKQTYN 464
G TYN
Sbjct: 262 NTGDAISTYN 271
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 31.1 bits (67), Expect = 0.13
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 267 GTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGS 446
G+ +G + ++ S+ W H V L +S + + SC D VY N +DG
Sbjct: 83 GSGDGAVKLWDASER--CERWTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGK 139
Query: 447 VKQTY 461
VK++Y
Sbjct: 140 VKRSY 144
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.23
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWD 98
FS DGKY +T +D +++IWD
Sbjct: 342 FSPDGKYLATGVEDQQIRIWD 362
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTE--TNVLKQEY 128
FS DGKY + + D +K+W+ + +NV Y
Sbjct: 466 FSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMY 498
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIWDTET-NVLKQEYTP 134
+ DG+Y T D LK+WD T L YTP
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 0.41
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETN 110
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 261 VLGTTNGKLLIYSISQAKIINVWVPAKHFSA 353
++G+ G L +Y+I ++ ++VW F A
Sbjct: 481 LIGSRTGSLALYNIGESNYLSVWRRIHEFDA 511
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 0.54
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTE 104
FS+DG+ + + + D +K+WDTE
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTE 340
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPP 158
F E+GK + T + D ++ W+ T V ++ D+ + S P
Sbjct: 404 FLENGKRFVTTSDDSSMRFWEYGTPV-PIKFVADIAMHSMP 443
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 0.71
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHL-TSPPTCLQW 173
+E G + ++ DG LKI DT T + ++ D + SP + +QW
Sbjct: 68 NESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQW 113
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTET-NVLKQEYTPDL--HLTSPPT 161
FS+ G++ T + DG ++ WD T +++ TP + LT PT
Sbjct: 580 FSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPT 624
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/60 (20%), Positives = 29/60 (48%)
Frame = +3
Query: 6 PKQ*NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVS 185
P ++ +S DG + + +G ++IW+ +T + +Y H +C+ W+ ++
Sbjct: 199 PTTYEVSSLAYSSDGGFLAIARVNGFVEIWNRKTKNNRCDY--KFHHDGDISCMAWSPIN 256
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 30 AMFSEDGKYYSTITKDGRLKIWDTET 107
A FS DG+ +T + D +++WD +T
Sbjct: 395 ASFSPDGRCIATASFDSSVRLWDGKT 420
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 348 SAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 443
+A +T + W + +YS + D + W+ +DG
Sbjct: 269 TAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 357 VTALDWSRKYGLYSCTKDSRVYEWN 431
VTA+DWS + L S + D V WN
Sbjct: 440 VTAVDWSSEGQLASISDDGSVRVWN 464
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 21 MAEAMFSEDGKYYSTITKDGRLKIWD 98
++ +S DG+ T DG++K+WD
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWD 367
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 21 MAEAMFSEDGKYYSTITKDGRLKIW 95
+ FS+D + T++KDG L +W
Sbjct: 193 VVSGFFSKDQQTIYTVSKDGALFVW 217
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWD 98
FS+DG Y + +D L++WD
Sbjct: 306 FSQDGNYLLSRGEDNALRVWD 326
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIWDTET 107
S+DG+ ++ ++D +K+WD+ T
Sbjct: 474 SKDGRIIASASQDKTIKLWDSST 496
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIW--DTETNVLK 119
SEDG + +T KD +++W + E NV K
Sbjct: 373 SEDGVWLATGAKDNTVRLWNLNIEDNVYK 401
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/60 (18%), Positives = 31/60 (51%)
Frame = +3
Query: 261 VLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIED 440
++ + N + + KI+ ++ K+ +V + + ++S ++D +VY W++E+
Sbjct: 196 LISSLNSSIHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLEN 255
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 18 NMAEAMFSEDGKYYSTITKDGRLKIW 95
N+ + + S+DG+ T + D +K+W
Sbjct: 218 NVRDILISDDGRTILTASSDATIKLW 243
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 21 MAEAMFSEDGKYYSTITKDGRLKIWDTETN--VLKQEYTPDLHLTSPP--TCLQWTT 179
+ + +S +G Y + K G + IWDT+++ V++ Y+ + L P L +TT
Sbjct: 233 VTDISWSSNGMYIAASFKKGGILIWDTQSHEVVVELPYSTVVALAWQPFENVLSFTT 289
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 524 WYNFYGVYIASLLRIIFNRNIIGLFD*TIFYVPLI 420
+++F +YI S ++ +I+GLFD YVP +
Sbjct: 99 YFSFTMLYIWSWKHPLYRISILGLFDVKAPYVPWV 133
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 417 LYCP*YSCINR-IFYSNPGRSL*R*NVW 337
+Y P Y + R IF NP RSL NVW
Sbjct: 427 VYYPYYEGVRRDIFLRNPDRSLYVGNVW 454
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 128
FS D KY + ++D ++W +T Y
Sbjct: 387 FSPDNKYLLSCSEDASARLWSVDTKTALVAY 417
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 366 LDWSRKYGLYSCTKDSRVYEWNIEDGSV 449
LDWS + + + VY WN + GSV
Sbjct: 186 LDWSN-LNVVAVALERNVYVWNADSGSV 212
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 110 VGLRIPYLKSAIFSNCRIVF 51
VGL IP +K + CR++F
Sbjct: 479 VGLIIPKMKQKVLKGCRLLF 498
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 288 LIYSISQAKIINVWVPAKHFSAKVTALDWSRKYG 389
+IY ISQ+ +W +K ++W YG
Sbjct: 131 IIYEISQSGYYCIWSHSKKMLPYQALVNWQNAYG 164
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPD 137
FS +G+Y +T G + IW +T L +E D
Sbjct: 483 FSHNGRYLATGDTSGGVCIWSCKTAKLFKELGSD 516
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/41 (26%), Positives = 16/41 (39%)
Frame = +3
Query: 57 YSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTT 179
+S+ + DG +IWD T + H L W T
Sbjct: 307 FSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNT 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,434
Number of Sequences: 5004
Number of extensions: 55872
Number of successful extensions: 252
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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