Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i02
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053) 58 4e-09
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 36 0.020
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1) 32 0.32
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45) 31 0.57
SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12) 31 0.57
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 31 0.75
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 30 1.3
SB_13776| Best HMM Match : Plasmid_killer (HMM E-Value=4) 30 1.7
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 3.0
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 29 4.0
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 29 4.0
SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14) 29 4.0
SB_27472| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_21111| Best HMM Match : WD40 (HMM E-Value=0.0047) 28 7.0
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)
Length = 321
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 194
F +G++ + +T DGRLK+WD LK +YTP HL++ CL+W S++V
Sbjct: 10 FDNNGRFLALLTPDGRLKVWDCTNGSLKNQYTPSSHLSTTCACLKWCNSSRNV 62
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 348 SAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNISIENNTK 488
S+KV ++WSR LYSC+ D + EW E K+ I +E K
Sbjct: 67 SSKVNDVEWSRNGELYSCSSDKYIVEWCTEKAEHKR--YIELETKAK 111
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 339 KHFSAKVTALDWSRKYG-LYSCTKDSRVYEWNIEDGSVKQTYNISIENNT 485
K + + AL + + G LYS +DS + WN+ + +K Y +S+E++T
Sbjct: 27 KRHRSGINALQYDKSNGRLYSAGRDSIIRCWNVRNERIKDPYMVSLEHHT 76
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 327 WVPAK--HFSAKVTALDWS---RKYGLYSCTKDSRVYEWNIEDGSVKQTYNIS 470
W P++ +S+KV +L WS +Y L++C D W I S QT++++
Sbjct: 301 WKPSEVQAYSSKVLSLLWSLGQHQYNLFTCGPDGNTMWWRIRPDSTDQTFHLA 353
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 34.7 bits (76), Expect = 0.061
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 1/145 (0%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSVSNLKGXX 215
FS++GK ++ D +LK+WD E+ L T P C W V ++ G
Sbjct: 1272 FSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGH---DGYPVCCAWNPVDNTMVATCGDN 1328
Query: 216 XXXXXXXXXXXXQCIVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLY 395
+ + ++ + K+ + + V ++D+S L
Sbjct: 1329 LELLIWDLETKSSTRLKSHGIDEAMVNFPDKKKLSG--HERLRYDSLVWSVDFSPDGMLL 1386
Query: 396 SCT-KDSRVYEWNIEDGSVKQTYNI 467
+ T DS V W+I G + T+NI
Sbjct: 1387 ASTGADSNVIIWDISTGERRYTFNI 1411
>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
Length = 263
Score = 32.3 bits (70), Expect = 0.32
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Frame = +1
Query: 7 RSNETWQKLCFPKTGNTIRQL---LKMADLRYGIRRPT---YSNRNTHLIFT*HHLLRAY 168
+S+++ KLC P+ GN + ++ + A + Y +R P Y N T LI HH +
Sbjct: 75 KSDKSISKLC-PQKGNGLIRVGGRIGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGH 133
Query: 169 SGQPSV-----NQFQT*KGTEAIQ 225
GQ SV N++ KG A++
Sbjct: 134 MGQESVLSSLRNEYWVIKGRSAVR 157
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 31.5 bits (68), Expect = 0.57
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Frame = +1
Query: 7 RSNETWQKLCFPKTGNTIRQ--LLKMADLRYGIRRPT---YSNRNTHLIFT*HHLLRAYS 171
+S+++ KLC K IR + A + Y +R P Y N T LI HH +
Sbjct: 1539 KSDKSISKLCPQKENGLIRVGGRIGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHM 1598
Query: 172 GQPSV-----NQFQT*KGTEAIQ 225
GQ SV N++ KG A++
Sbjct: 1599 GQESVLSSLRNEYWVIKGRSAVR 1621
>SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)
Length = 811
Score = 31.5 bits (68), Expect = 0.57
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Frame = +1
Query: 7 RSNETWQKLCFPKTGNTIRQ--LLKMADLRYGIRRPT---YSNRNTHLIFT*HHLLRAYS 171
+S+++ KLC K IR + A + Y +R P Y N T LI HH +
Sbjct: 449 KSDKSISKLCPQKENGLIRVGGRIGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHM 508
Query: 172 GQPSV-----NQFQT*KGTEAIQ 225
GQ SV N++ KG A++
Sbjct: 509 GQESVLSSLRNEYWVIKGRSAVR 531
>SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12)
Length = 873
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 402 TKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNI 503
+K + WN E+ S+ +++S NN+K G+++
Sbjct: 381 SKSIEIVSWNFEEWSIAVVFDVSAVNNSKNGTSL 414
>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 31.1 bits (67), Expect = 0.75
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 27 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
+ FSED +Y T + D ++W+ E + +EY+
Sbjct: 246 DCAFSEDSQYLVTASSDNLARLWNVEAGEVVREYS 280
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 360 TALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKIIPHNQHK 539
T ++ +Y L S ++ Y NI + TYN++ N+ + S I+ P NQ +
Sbjct: 287 TYSSYNNRYNLNSYNNNNNTY--NINTYNNNNTYNVNSYKNSNKNSYISTSDSYPKNQKE 344
Query: 540 KSRY 551
K +
Sbjct: 345 KKTW 348
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTET 107
+S DG Y +T DG++K+W+T T
Sbjct: 1259 YSPDGNYIATGGDDGKVKLWNTMT 1282
>SB_13776| Best HMM Match : Plasmid_killer (HMM E-Value=4)
Length = 316
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +1
Query: 7 RSNETWQKLCFPKTGNTIRQ--LLKMADLRYGIRRPT---YSNRNTHLIFT*HHLLRAYS 171
+S+++ KLC K IR + A + Y +R P Y N T LI HH +
Sbjct: 238 KSDKSISKLCPQKENGLIRVGGRIGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHM 297
Query: 172 GQPSV 186
GQ SV
Sbjct: 298 GQESV 302
>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
FS +GKY T D LK+WD + YT
Sbjct: 130 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 161
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 30 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 125
A FS DG+Y T + DG +++W+ T ++++
Sbjct: 220 AAFSPDGQYLVTGSVDGFIEVWNFTTGKIRKD 251
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 128
FS DG+Y ++ + D R+ IW T+T L +
Sbjct: 341 FSPDGRYLASGSFDKRVHIWSTQTGNLVHSF 371
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 27 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
+ F+ DG + + D +K+WDTET YT
Sbjct: 138 DVSFNNDGTQFLSAGYDRYVKLWDTETGECLGRYT 172
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +3
Query: 57 YSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 194
+ + ++DG + +WDT + S P CL W+ + S+
Sbjct: 145 FLSASRDGSVVLWDTRKPRPAKRLADPTQYDSIPCCLDWSPLDSSI 190
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 339 KHFSAKVTALDWSRKYG-LYSCTKDSRVYEWNI 434
K + KV + WS+ + SC D VYEWN+
Sbjct: 271 KGHNGKVRQVIWSQDDSKIISCGMDGAVYEWNV 303
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 45 DGKYYSTITKDGRLKIWDTE 104
D KY++T KDG L +W T+
Sbjct: 779 DDKYFATCAKDGVLHLWTTD 798
>SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14)
Length = 467
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Frame = +1
Query: 7 RSNETWQKLCFPKTGNTI--RQLLKMADLRYGIRRPT---YSNRNTHLIFT*HHLLRAYS 171
+S+++ KLC K I + A + Y +R P Y N T LI HH +
Sbjct: 75 KSDKSISKLCPQKENGLICVGGRIGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHM 134
Query: 172 GQPSV-----NQFQT*KGTEAIQ 225
GQ SV N++ KG A++
Sbjct: 135 GQESVLSSLRNEYWVIKGRSAVR 157
>SB_27472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVL 116
FS DG Y + DG+L IWD ++ L
Sbjct: 10 FSPDGSYVISGDADGKLNIWDWKSTKL 36
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 33 MFSEDGKYYSTITKDGRLKIWDTETNV 113
+F KY T +DG +K+WD NV
Sbjct: 191 LFFNPLKYLITAARDGSIKVWDDTGNV 217
>SB_21111| Best HMM Match : WD40 (HMM E-Value=0.0047)
Length = 96
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIWDTE 104
S+D Y++T + DG +K+WD +
Sbjct: 56 SQDLMYFATASDDGTVKLWDLQ 77
>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 45 DGKYYSTITKDGRLKIWDTETN 110
DGKY ++ KD ++IWD +T+
Sbjct: 125 DGKYLASGGKDKLIRIWDPDTS 146
>SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 369 DWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNI 467
D + + + SC+ D +V W+ DG++ + Y I
Sbjct: 71 DTTNELQVISCSGDGQVIMWDFMDGAILKKYEI 103
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/126 (17%), Positives = 46/126 (36%)
Frame = +3
Query: 105 TNVLKQEYTPDLHLTSPPTCLQWTTVSQSVSNLKGXXXXXXXXXXXXXXQCIVLGTTNGK 284
T+VL+ ++PD H + + + G C++
Sbjct: 180 THVLRLSWSPDGHYVVSAHAMNNSGPVAKILERDGWKTKMDFVGHRKAITCVLTSLKRPL 239
Query: 285 LLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYN 464
++++ + I++V F V + D S Y ++ + + +D KQ Y
Sbjct: 240 VVVHDLFNHSIMDVSWSQSGFELLVCSWDGSIAYANFTSEELGKAMSQEEKDKFHKQVYG 299
Query: 465 ISIENN 482
ISI ++
Sbjct: 300 ISISSS 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,934
Number of Sequences: 59808
Number of extensions: 388195
Number of successful extensions: 1012
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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