Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19i02
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 36 0.031
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 34 0.071
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 34 0.093
Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical pr... 33 0.12
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.7
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 29 3.5
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 29 3.5
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 28 4.6
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 28 4.6
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 28 4.6
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 28 4.6
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 28 4.6
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 28 4.6
AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical... 28 4.6
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 28 6.1
U80029-14|AAB37593.2| 213|Caenorhabditis elegans Hypothetical p... 28 6.1
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 28 6.1
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los... 27 8.1
AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 35.5 bits (78), Expect = 0.031
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Frame = +3
Query: 27 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSVSNLK 206
E F+ +G + + + D +K+WDTET +KQ + H P CL++
Sbjct: 324 EVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRF----HTGHVPYCLKY----------- 368
Query: 207 GXXXXXXXXXXXXXXQCIVLGTTNGKLLIYSISQAKIINVWVPAKHFSA--KVTALDWSR 380
++G N K++ + +I+ + +H A +T D +R
Sbjct: 369 --------HPDDDKNHMFLVGMQNKKIIQWDSRSGEIVQEY--DRHLQAVNSITFFDKNR 418
Query: 381 KYGLYSCTKDSRVYEWNI 434
++ S K R++EW I
Sbjct: 419 RFASTSDDKSVRIWEWEI 436
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 34.3 bits (75), Expect = 0.071
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 27 EAMFSEDGKYYSTITKDGRLKIWDTETN 110
+A+FS +G+Y T D ++KIWD E N
Sbjct: 330 DAIFSSEGRYIFTGGNDNQVKIWDVENN 357
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 33.9 bits (74), Expect = 0.093
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 30 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 194
A +S DG +T +DG++KIW++ ++ T D H TS T ++WT +++
Sbjct: 366 AEYSPDGSLMATGAEDGKVKIWNSRSSFC--TVTFDEH-TSGVTAVKWTQSGRAI 417
>Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical
protein F28C6.3 protein.
Length = 430
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 18 NMAEAMFSEDGKYYSTITKDGRLKIWDTETN 110
++ + +SE+ + Y T +KDG +KIWD +N
Sbjct: 261 SVTDVHYSENARLYVTASKDGHVKIWDGVSN 291
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 18 NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
++ A F+++GKY T D +K+W+ TN YT
Sbjct: 305 SICSAKFTKNGKYILTSGMDSIVKLWELSTNRCLIVYT 342
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.1 bits (67), Expect = 0.66
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWD 98
FSE+G Y +T ++DG +K+WD
Sbjct: 388 FSENGYYLATGSEDGEVKLWD 408
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 21 MAEAMFSEDGKYYSTITKDGRLKIWDTET-----NVLKQEYTPDLHLTSPP 158
++ F+ DG Y ++ + DG ++IWD+ T ++ +E+ P H+ P
Sbjct: 235 VSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSP 285
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
FS +GKY + LK+WD + + +EYT
Sbjct: 283 FSPNGKYILASNLNNTLKLWDYQKLRVLKEYT 314
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 21 MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
+A FS +GKY D LK+WD ++YT
Sbjct: 259 VAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQYT 295
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 18 NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 131
+++ A FS GKY T + D +KIW+ + + ++ T
Sbjct: 89 SISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLT 126
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 414 RVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKIIPHNQHKKSRYLVTASYQL 575
R W D S+ + + NN +N N +IPH +S +L+T +QL
Sbjct: 110 RCCNWAFPDKSLLHIHLQTATNNNDSNNNNN--SVIPHGVINRSCHLITDPFQL 161
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 276 NGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 443
+G + I+ Q ++ + H +A VT L W + +YS ++D V W +DG
Sbjct: 216 DGNIFIWDTVQGTVVRCL--SGH-TASVTCLRWGGEGLIYSGSQDRTVKMWRADDG 268
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 21 MAEAMFSEDGKYYSTI-TKDGRLKIWDTETNVL 116
+A FSEDGKY +T +DG++ + T + L
Sbjct: 1248 IAAVAFSEDGKYLATYGAEDGKINFFQTSQSFL 1280
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 258 IVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYG----LYSCTKDSRVYE 425
I+ G NG ++I+ +++ ++ + H S K+TA+ + S + D RV
Sbjct: 42 IITGAENGHIIIWKLAEG-LMPKQLMIGH-SQKITAISQTTNTPTNTRFVSASADGRVCL 99
Query: 426 WNIEDG-SVKQTYNISI 473
W I+DG + T +I+I
Sbjct: 100 WEIQDGRCIDSTSSIAI 116
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 149
S DGK + +G + WD T + + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 149
S DGK + +G + WD T + + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 264 LGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYE 425
L + +L S S+ + + PAKH A + W GL S + S + E
Sbjct: 201 LDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 254
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 264 LGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYE 425
L + +L S S+ + + PAKH A + W GL S + S + E
Sbjct: 382 LDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 435
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 393 YSCTKDSRVYEWNIEDGSVKQTYNISIENN 482
YSCT +NI + ++ YNIS E N
Sbjct: 370 YSCTSKCNSVRYNINNNDDEELYNISGETN 399
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 39 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 149
S DGK + +G + WD T + + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical
protein C08F1.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 459 YNISIENNTKQGSNINAIKIIPHNQH-KKSRYLVTASYQLSLWRLHNKDVTL 611
++ISI+NN + ++ + N+ +K R+ + ASYQLSL H +TL
Sbjct: 306 WSISIKNN----NGFASLMLNCENELIEKERWAIQASYQLSLVYCHGNRITL 353
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTET 107
FS D + +T + DG++K+W ET
Sbjct: 272 FSRDSEMLATGSIDGKIKVWKVET 295
>U80029-14|AAB37593.2| 213|Caenorhabditis elegans Hypothetical
protein T20D4.4 protein.
Length = 213
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 390 LYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKI 518
L++ + D+R ++ ++EDG +++++ + +KQ N I I
Sbjct: 171 LWTISLDARAFKADLEDGINSESFSVEVFWKSKQDHNQTTISI 213
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 36 FSEDGKYYSTITKDGRLKIWDTET 107
FS D + +T + DG++K+W ET
Sbjct: 272 FSRDSEMLATGSIDGKIKVWKVET 295
>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
protein 4 protein.
Length = 1392
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 60 STITKDGRLKIWDTETNVLKQEYTPDLHLTS 152
+TIT+D RL IW TN ++ P ++ S
Sbjct: 713 ATITEDDRLMIWGNFTNAQQRMEMPQMNAKS 743
>AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical
protein C04C3.6 protein.
Length = 344
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = -3
Query: 250 DSFSLVLAFELLRFPFKFETD*LTVVHCRHVGGDVK*RSGVYSCLSTLVSVSHILSLP-- 77
++F+L+ A E++ E L +VH + D++ R+ L +V+ +L+LP
Sbjct: 228 NAFTLISADEIVHHESTDEKSPLKIVHKSKIMLDIRRRNDAIRRCLLLATVTLLLNLPNY 287
Query: 76 SLVIVE*Y--FPSSENIA 29
SL +++ + F SE++A
Sbjct: 288 SLQLIDEFYHFRESEDLA 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,725
Number of Sequences: 27780
Number of extensions: 303086
Number of successful extensions: 825
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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