Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19i02
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 255 CIVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVY 422
           C+ +  +    L+   S    I ++ P K+   KVT  D S+K G  + T     Y
Sbjct: 741 CVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKY 796


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 255 CIVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVY 422
           C+ +  +    L+   S    I ++ P K+   KVT  D S+K G  + T     Y
Sbjct: 831 CVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKY 886


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 331 CPPNILALK*PPWIGVENTVYTAVLRTV 414
           C P + A     W+G  N+    V+ TV
Sbjct: 652 CQPGVTAFIVTSWLGYMNSFVNPVIYTV 679


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 450  KQTYNISIENNTKQGSNINAIKIIP 524
            +Q +N  + NN K G N   + ++P
Sbjct: 1503 QQEWN-QVSNNVKPGGNFVVLDLVP 1526


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 VPMHSIRHYKW*TVNILNKSSEN 316
           VP H+   +KW  ++I N ++ N
Sbjct: 119 VPNHTSDQHKWFQMSINNTNNNN 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,050
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)