Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19h24
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 173 9e-44
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 33 0.18
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 31 0.98
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7) 29 2.3
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 29 2.3
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 5.2
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 5.2
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.2
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005) 28 6.9
SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5) 28 6.9
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 173 bits (421), Expect = 9e-44
Identities = 77/136 (56%), Positives = 103/136 (75%)
Frame = +2
Query: 2 SCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL 181
SC+ MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V
Sbjct: 549 SCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDK 608
Query: 182 LKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEI 361
++V+ WF S+KELA V+T+ +H+ENMIKGV G++YKMRAVYAHFPIN E +++E+
Sbjct: 609 VRVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEV 668
Query: 362 RNFLGEKYIRRVKMAP 409
RNFLGEKY+RRV+M P
Sbjct: 669 RNFLGEKYVRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +2
Query: 494 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 583
ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 341 GNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 514
G ++ +++ LG++ + T + K+EL +SLE+VS A +Q S
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255
Query: 515 TVKNKDIRKFLDGLYVSEK 571
K+++I L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 380 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 556
K R ++A G+ ++P Q + LI G EDV S+ +L + + + KF DG
Sbjct: 25 KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83
Query: 557 YVSEKTTV 580
+V ++ T+
Sbjct: 84 FVKKRNTI 91
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 83 VKSRLVTVKGPRGVLKRNFKHL 148
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
Length = 535
Score = 29.5 bits (63), Expect = 2.3
Identities = 30/134 (22%), Positives = 52/134 (38%)
Frame = +2
Query: 173 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 352
P K W K A+ +E I TK Q K +Y N E ++
Sbjct: 215 PGFRKKSSWCPEKGREIAIEAYAKALEEKILSSTK--QGK---IYR----NLTQDERRAL 265
Query: 353 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 532
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 266 KDLR-YAKDIVIKEADKGSGVVVMDKDKYNQEALRQLSDKEVYKETKDLTQYITELVNRR 324
Query: 533 IRKFLDGLYVSEKT 574
+RK ++ +KT
Sbjct: 325 VRKLSSDGFIDDKT 338
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 465 LPSMINSSFCLGELTTVTPGAIFTLLMYFSPKKLRISIIE 346
+P I S LG+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 29.1 bits (62), Expect = 3.0
Identities = 30/134 (22%), Positives = 54/134 (40%)
Frame = +2
Query: 173 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 352
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 444 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 494
Query: 353 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 532
++R + + I+ GV V++ K E++ + + E + L Q T + N+
Sbjct: 495 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEVLRQLSDKEVYKETKDLTQYITELVNRR 553
Query: 533 IRKFLDGLYVSEKT 574
+RK ++ +KT
Sbjct: 554 VRKLSADGFIDDKT 567
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/134 (20%), Positives = 50/134 (37%)
Frame = +2
Query: 173 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 352
P K W K A+ +E I TK +Y N E ++
Sbjct: 205 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK-----QGTIYG----NLTQDERRAL 255
Query: 353 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 532
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 256 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 314
Query: 533 IRKFLDGLYVSEKT 574
+RK ++ +KT
Sbjct: 315 VRKLSADGFIDDKT 328
>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 29.1 bits (62), Expect = 3.0
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +2
Query: 173 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 352
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 123 PAFRKKSSWCPEKSREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERQAL 173
Query: 353 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 532
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 174 KDLR-YTKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 232
Query: 533 IRKFLDGLYVSEKT 574
+RK ++ +KT
Sbjct: 233 VRKLSADGFIDDKT 246
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 240 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 97
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 8 VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 121
++ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 56 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 190
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 178 TRVYHANVNSQVFKVP-------FENSAGPFNCHQTRFHMDRKP 68
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.3 bits (60), Expect = 5.2
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +2
Query: 173 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 352
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 57 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 107
Query: 353 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 532
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 108 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 166
Query: 533 IRKFLDGLYVSEKT 574
+RK ++ +KT
Sbjct: 167 VRKLSADGFIDDKT 180
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 495 AAELETSSKELPSMINSSFCLGELTTVTPGAIFTLLMYFSPKKLRISIIEL 343
AAE++TS L + + S CL VT IFT MY P+++ ++ L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284
>SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005)
Length = 316
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 443 DELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKT-TVVLDD 592
D ++EG+ + V S AA++++ V N +DG V+ +++LDD
Sbjct: 169 DAAVVEGDKVVVVDSDAAVVERDKVVVNDSDAAVVDGDEVAVVAWSLILDD 219
>SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)
Length = 422
Score = 27.9 bits (59), Expect = 6.9
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +2
Query: 173 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 352
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 107 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 157
Query: 353 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 532
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 158 KDLR-YAKDIVIKEADKGSGVVVMDKGKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 216
Query: 533 IRKFLDGLYVSEKT 574
+RK ++ +KT
Sbjct: 217 VRKLSADGFIDDKT 230
>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 546 KNFLISLFLTVVDCWMRAAELETSSKELPSMINSSFCLGELTTV 415
K+F+ + +VDCW+ + E S+ LPS S +TTV
Sbjct: 298 KDFIGRIVPLLVDCWIESNPAEMST-SLPSSSISPVAFSTMTTV 340
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.5 bits (58), Expect = 9.1
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +2
Query: 209 KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE-IRNFLG 376
K+ LAA + V + N+ KGVT+G K R V PI V T+G + + + G
Sbjct: 948 KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007
Query: 377 EKYIRRVKMAPGVTVVNS-PKQKDELIIEG 463
+ + + PG V P + ++ +G
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,482,425
Number of Sequences: 59808
Number of extensions: 406144
Number of successful extensions: 1047
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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