Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h23
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.5  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   5.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   7.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   7.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.6  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   9.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.6  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 255 LQLLQIQQHACIHQRELTLFRHLMYLYL 172
           L++L+I  +A IHQ E+  F HL  LY+
Sbjct: 781 LRILRISNNA-IHQLEVDQFPHLRTLYM 807


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 504 THLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDL 605
           T L+LQNL  E ++  KE+ K      K+E+I+L
Sbjct: 18  TSLVLQNLKEETENQLKELEKKRSQLHKEEQINL 51


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 324 KVALCLGMFY*KRQHPYQLDADELQLLQIQQHACIHQRELTLFRHLMYLYLICA 163
           KV    G+ Y +  HP+  + D    L++  +    Q+ L   + + Y+Y  CA
Sbjct: 76  KVIWRRGLAYLRLGHPHLANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRECA 129


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 468 DALHKEKQRVDSTHLLLQNLLYEADHLNKEVTKCLQ 575
           ++L  EK       L    L ++   LN+E+  CLQ
Sbjct: 455 ESLELEKHDQQKKRLTYSELFHKTQELNEELQSCLQ 490


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +3

Query: 117 IKLNMGKEEVTAVKKRRKL-NTSTSNDGTKSVPV---DVYKRVVEFEEAEAHLRPADKDA 284
           +K N+     T  KKRR+  NTS  NDG     V   + +++ + ++E++  +   ++ +
Sbjct: 238 LKRNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEKNIIYDESD--VNKTNQSS 295

Query: 285 AFFNKTCQDIRQLFKE 332
            F +K+  DI   F E
Sbjct: 296 FFIDKSLVDIDFAFDE 311


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -1

Query: 499 STLCFSLWSASRPALVRTFSRRFNFFNATSSNEASTL---FAFIFSLASNVSLVFNSAIS 329
           STL  S  S+SRPA   + S   +   ++SS+++S+     AF  +  S+ S   +S+ S
Sbjct: 381 STLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHS 440

Query: 328 LKS 320
           L S
Sbjct: 441 LSS 443


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 FEEAEAHLRPADKDAAFFNKTCQDIRQLFKEI 335
           F+  E  L P     +F++K   D+R  FK++
Sbjct: 266 FQLRETFLDPKHSMFSFYDKAVLDVRHYFKDV 297


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 492  RVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEE 620
            R++   L    L  + DHLN+E+ +  +   K++E  ++ LEE
Sbjct: 1384 RLEDNQLATNKLKNQLDHLNQEI-RLKEDVLKEKESLIISLEE 1425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,178
Number of Sequences: 5004
Number of extensions: 38588
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)