Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h23
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154...    52   3e-07
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246...    31   1.1  
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097...    30   1.4  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    28   5.7  
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653...    28   7.5  
02_05_0992 - 33364827-33365750                                         27   9.9  
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355...    27   9.9  

>02_05_0863 +
           32313890-32314132,32314227-32314517,32315157-32315493,
           32315944-32316278,32316763-32317010,32317296-32317881,
           32317970-32318083,32318165-32318287,32318325-32318531
          Length = 827

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +3

Query: 486 KQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYK 629
           K  VDST L L NLLYE +H  K +  CL F++K   I+LVP EEF++
Sbjct: 101 KAPVDSTTLQLHNLLYEKNHYVKAIRACLDFQTKYPGIELVPTEEFHR 148


>06_03_1403 +
           29923503-29923821,29924269-29924405,29924495-29924647,
           29924690-29925280,29925523-29925597,29925901-29926169,
           29927238-29927331
          Length = 545

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +3

Query: 450 RTRAGRDALHKEKQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYK 629
           R R     L KEK+  DS+ L +  L  +   + ++  K LQ+ ++ +E+D + LEE  K
Sbjct: 263 RKRIATKGLGKEKEGEDSSPLYVDELDEQPRPMGQKRAKKLQY-AQSKEVDHIDLEELDK 321

Query: 630 MHLL 641
              L
Sbjct: 322 FSKL 325


>06_03_0902 -
           25806912-25807190,25807876-25808094,25809469-25809711,
           25809810-25809974,25810141-25810721,25810940-25811048,
           25811158-25811250,25811474-25811535,25811895-25811967,
           25812879-25813007,25814107-25814229
          Length = 691

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 123 LNMGKEEVTAVKKRRKLNTSTSNDGTKSVPVDVYKRVVEFEEAEAHLRPADKDAA 287
           L+   E  +++   RK N      G ++  +D YK VV  E+ +++   A KD+A
Sbjct: 229 LDQPNERASSMSNHRKKNHVFLEHGVRNGSIDTYKGVVSEEDHDSNPGHARKDSA 283


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 135 KEEVTAVKKRRKLNTSTSNDGTKSVPVDVYKRVVEFEEAEAH 260
           +EE+  ++    ++TSTS DG   V +  YK++    ++ A+
Sbjct: 137 QEEIANLRMASNVDTSTSGDGIHVVGLQSYKKIEALMQSTAN 178


>11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,
            6534267-6534316,6535110-6537065,6537458-6538209
          Length = 1075

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 156  KKRRKLNTSTSNDG-TKSVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKTCQDIR 317
            ++RR +  S S D  ++     V   V +F E ++ LRPAD   + FN+  ++ R
Sbjct: 983  RQRRSIEPSFSRDRLSQPRKHSVASAVPKFGEWDSPLRPADNYTSIFNRAREEKR 1037


>02_05_0992 - 33364827-33365750
          Length = 307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 445 FSRRFNFFNATSSNEASTLF 386
           ++R  NFFNAT  ++AS LF
Sbjct: 284 WARTLNFFNATEGHKASPLF 303


>01_06_1822 -
           40132919-40133208,40134313-40134398,40135067-40135566,
           40135708-40135905
          Length = 357

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 305 ACFIEKGSILISWTQMSFSFFKFNNTLV 222
           A F+ KG   +SW+  SFS     N+LV
Sbjct: 90  ARFMSKGGCAVSWSITSFSLSTLTNSLV 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,431
Number of Sequences: 37544
Number of extensions: 206451
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)