Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h23
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)                       52   5e-07
SB_19401| Best HMM Match : Rop (HMM E-Value=3)                         31   1.1  
SB_24229| Best HMM Match : Fukutin-related (HMM E-Value=0.61)          30   1.9  

>SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)
          Length = 398

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = +3

Query: 543 HLNKEVTKCLQFKSKDEEIDLVPLEEFY 626
           HL KE+TKCL+FKSKDEE++LV  EEFY
Sbjct: 2   HLKKEITKCLEFKSKDEEVELVTEEEFY 29


>SB_19401| Best HMM Match : Rop (HMM E-Value=3)
          Length = 451

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 147 TAVKKRRKLNTSTSNDGTKSVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKT-CQ 308
           T ++ R+ L + +  DG   +P  +  +  +F   +    PAD     FNKT CQ
Sbjct: 104 TVLEIRKLLQSHSELDGASGLPESLRSQAEQFFPRQKEENPADSFQGLFNKTWCQ 158


>SB_24229| Best HMM Match : Fukutin-related (HMM E-Value=0.61)
          Length = 604

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 147 TAVKKRRKLNTSTSNDGTKSVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKT-CQ 308
           T ++ R+ L + +  DG   +P  +  +  +F   +    PAD     FNKT CQ
Sbjct: 317 TVLEIRKLLQSHSELDGASGLPESLRSQAEQFFPRQKEEDPADSFQGLFNKTWCQ 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,647
Number of Sequences: 59808
Number of extensions: 249286
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)