Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h23
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    54   1e-07
U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    28   6.7  
Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +3

Query: 465 RDALHKEKQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFY 626
           R  + +  + VD+  L LQN+  E  H+ KE+ +CL F + DEE++LVP E+F+
Sbjct: 110 RKEVAERMENVDAKLLQLQNVTSEVQHIQKEIDRCLDFSAGDEELELVPFEQFH 163


>U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical
           protein R05G6.9 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 493 LCFSLWSASRPALVRTFSRRFNFFNATSSNEAST-LFAFIFSLASNVSLVFN 341
           +CF  WS      V      FN F+  ++N  +  LF  +F  AS+++L+ N
Sbjct: 65  MCFLGWSGDSCDSVANLMDPFNLFSNNNNNNNNNQLFPNLFPTASSLNLLNN 116


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 453 TRAGRDALHKEKQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEE 620
           TRA R++   E    +        L  ++D+ N   ++C+    KDEE DL+   E
Sbjct: 96  TRASRESTDSEVSESEQISNAYNKL--KSDYSNIICSRCIIIGGKDEEFDLIERHE 149


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical protein
            F22E10.3 protein.
          Length = 1327

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 121  FIQVYQISSKS---GTLKKSLI*TDNYNLTAYSLYSLDLFLY 5
            F   YQ SSK      LKK +I   NY+LT   +Y +  F Y
Sbjct: 969  FFDHYQTSSKQQKRSELKKGMIEAINYSLTQSFMYFMMCFTY 1010


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
            related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 121  FIQVYQISSKS---GTLKKSLI*TDNYNLTAYSLYSLDLFLY 5
            F   YQ SSK      LKK +I   NY+LT   +Y +  F Y
Sbjct: 969  FFDHYQTSSKQQKRSELKKGMIEAINYSLTQSFMYFMMCFTY 1010


>Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical
           protein F36G9.3 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -1

Query: 205 DFVPSFDVLVFNLRRFLTAVTSSFPMFSFIQ--VYQISSKSGTLKKSLI*TDNYNLTAYS 32
           D +P F + +      + A+ S+F +FS ++  VY+   KSG  KK +  T     T   
Sbjct: 164 DVIPKFTIKLLYSMFTILAILSAF-VFSMLREPVYK-KEKSGCYKKLMTSTFRLLFTRKM 221

Query: 31  LYSLDLFLYI 2
           L+ + +F Y+
Sbjct: 222 LFLIVIFSYV 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,331,583
Number of Sequences: 27780
Number of extensions: 209301
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)